Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20191
         (532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.42 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.2  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   3.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 264 WTKDGKEIVKSYFPI-QFRVIFTEQTVKLINKRDHHALKLIDQ 389
           +T   KE++   F + +FR+    Q  K+I + DH ALK + +
Sbjct: 642 YTTTEKELLGVIFALHKFRIYI--QVTKIIIRTDHQALKFLSR 682


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 438 CWFCLWSHRMQFCCGFV 388
           C F +++  + FCC F+
Sbjct: 171 CAFIIFTMHLLFCCAFI 187


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 445 TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTV 335
           T+L+    E  +  +LW C S N      +L +S TV
Sbjct: 242 TYLIWTIYEMYHLAILWSCTSTNCPRFLIMLALSYTV 278


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 221 IRRFTASLITSPFFSFRYSEH 159
           +RR   SL  S  FS + SEH
Sbjct: 147 LRRLEMSLEKSGLFSSKTSEH 167


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 EEHHGLRYQLWTKDGKEI 287
           ++H  +++  WT DG ++
Sbjct: 139 DQHCDMKFGSWTYDGNQL 156


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 EEHHGLRYQLWTKDGKEI 287
           ++H  +++  WT DG ++
Sbjct: 139 DQHCDMKFGSWTYDGNQL 156


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 EEHHGLRYQLWTKDGKEI 287
           ++H  +++  WT DG ++
Sbjct: 139 DQHCDMKFGSWTYDGNQL 156


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 EEHHGLRYQLWTKDGKEI 287
           ++H  +++  WT DG ++
Sbjct: 139 DQHCDMKFGSWTYDGNQL 156


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 EEHHGLRYQLWTKDGKEI 287
           ++H  +++  WT DG ++
Sbjct: 139 DQHCDMKFGSWTYDGNQL 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,323
Number of Sequences: 336
Number of extensions: 2747
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)