Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20191
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.00 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.0  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    25   5.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   5.3  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    25   5.3  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   5.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.0  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   7.0  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 109 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 225
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 345 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 437
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 283 SFPSFVHNW*RSPWCSSCRFRS 218
           S+  FV  +  SPW S+CR  S
Sbjct: 144 SYTPFVMQYLNSPWFSACRVES 165


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 395  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 279
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 467 TGVNFPGDFLAGFVFGVTECNFVVVLLVDQLEG 369
           +G NF  D +AG    + ECN +  +++D   G
Sbjct: 252 SGTNFDADSVAGAKAKLEECNKLPSIMIDCSHG 284


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 127 VIGEYETAIAKC-SEYLKEKKGE---VIKEAVKRLIENGKRNTMDFATSYGQRME 279
           ++ ++E A++ C S Y  + + E   ++   + +  ++G  N +DF T Y  R++
Sbjct: 742 ILNDWEGALSYCNSVYSIDGETEPYYMLLAEISKNYKSGSLNILDFITKYSSRLD 796


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 195 YQGSREASDRKRQEEHHGLRYQLWTKDGKEIVKSYFPIQF----RVIFTEQTVKLINKRD 362
           Y G+  A    +       R+Q + KD + I+ +++P QF    R+       K ++KR+
Sbjct: 320 YLGNNAAEKSLQMNLEDEQRFQQFLKDEESIMSNWYPGQFPSASRLFLGHLNTKSLSKRN 379


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 183 EGRGYQGSREASDRKRQEEHHGLRYQLWTKDGKEIVKS 296
           +GR  +   +A  R R    H +RY  W  D KE  ++
Sbjct: 52  QGRKRKEFEDAIRRNRLAMGHWMRYGQWELDQKEFARA 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,205
Number of Sequences: 5004
Number of extensions: 43975
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)