Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20191
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.58
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 31 0.76
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 30 1.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 1.8
06_01_0772 + 5770502-5770619,5771035-5772335 29 3.1
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 3.1
03_02_0950 + 12661008-12662312,12662403-12662576 28 4.1
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 4.1
11_06_0198 - 21158350-21159528 28 5.4
08_01_0692 + 6121443-6122266,6122812-6124798 28 5.4
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 27 7.1
04_03_1035 - 21887562-21890030 27 7.1
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 7.1
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 9.4
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 27 9.4
07_03_1052 + 23598547-23600181 27 9.4
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 27 9.4
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 321 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 425
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 326 HRADCQAHKQKG---PSRPQVDRPTKPQQNCIR*LQRQNQQESLLESLPPCWKTTEFTLR 496
+ +DC+ H+ K + Q+ K N ++ + + + L+ L CW + FT
Sbjct: 673 NESDCRLHELKDLELGGKLQIHNLLKVT-NPLQAKEANLENKKNLQQLALCWDSRNFTCS 731
Query: 497 XCHRDKQYLKL 529
CH +YL+L
Sbjct: 732 HCHSADEYLQL 742
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 174 EGKEGRGYQGSREASDRKRQEEHHGLRYQLWTKDGKEIVKSYFPIQFRV 320
EG E + R+A R Q H LR ++ T + I ++Y P+ FR+
Sbjct: 249 EGNEVKMEMTVRDAYQRSMQTLFHWLRNEVNTNKTQIIFRTYAPVHFRL 297
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 389 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 303
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 245 WTSLPVMDKGWKGNRQILLP--HPV*SDLHRADCQAHKQKGPSRPQV 379
W++LP+++ G+ G + LP + +D HR C Q R Q+
Sbjct: 399 WSALPLLEIGFAGGAALALPPRNVFYNDPHRGLCMTFAQNPALRSQI 445
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Frame = -2
Query: 261 TGSEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHI 115
T E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 704 TVDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKI 763
Query: 114 QLLRQYVISSWCKCGVXSQRTHGEDEGK 31
L + + C+ V S R HG +G+
Sbjct: 764 IRLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 94 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 195
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Frame = +3
Query: 138 IRDRYRQML*ISEGKEGRGYQGSREASDRKRQ-EEHHGLRYQLWTKDGKEIVKSYFPIQF 314
I+D+YR+M+ G G ++G R RQ + W + G+ V
Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTVPKMVGQGV 225
Query: 315 RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKVYPRVG 473
+ + +RD +AL + + + + ++ KDK + ++ R+G
Sbjct: 226 YGVGPVLAALMAERRDFYALYIQEGMDFS-VSNKKKKDKKGIEKVLQLAERIG 277
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 120 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHH 245
+CR W R + + + E +E Y G RE RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 392 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 279
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 363 HHALKLIDQQNHNKIAFGDSKDKTSKKVSWKVYPR 467
+H L + H++I+F ++KDK + K++WK+ R
Sbjct: 429 YHVLMASNGIFHSEISF-ETKDKGAPKLAWKIKKR 462
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 118 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNT 243
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 26 LCLPSSSPCVRWLXTPHLHQELMTYWRSSCI*VSSLVNTRPLS 154
LC P + +RW TP + +++ W+ C +++ T+ ++
Sbjct: 204 LCTPQPT-IIRWSTTPPVSADVLHQWKGFCALIANAYYTKGMA 245
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 392 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 303
++V L GVM P + +L L+ +++SKL G
Sbjct: 8 MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 PRT--DDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDF 252
P+T DV+ + V+ +YE I + E+L+ G++I +K + G MDF
Sbjct: 77 PKTKGSDVVYDSFIRPTVM-QYEPNIEQRLEHLRANSGQLIAFYIKNFADKGTAFFMDF 134
>07_03_1052 + 23598547-23600181
Length = 544
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 285 FPFHPLSITGSEVHGVPLAV 226
F FHPL+I+GS+V L V
Sbjct: 348 FEFHPLAISGSKVEAAHLGV 367
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -1
Query: 529 ELQVLFVSVTXS*SKLCCFPTRG*TFQETFLLVLSLESPNAILLWFCWSINLRA*WSLLF 350
++Q+L V VT +LCC P + L ++ L C S + A W L+F
Sbjct: 447 QVQLLVVCVTAQ-PRLCCPPAMVAGREALACLPIAQVVSKCDLCAGCGSAIMMA-WRLIF 504
Query: 349 MSLTVCSV 326
SL +C +
Sbjct: 505 FSLQLCKI 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,537
Number of Sequences: 37544
Number of extensions: 296869
Number of successful extensions: 953
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -