Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20191
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_24908| Best HMM Match : Transglut_C (HMM E-Value=0.028)             29   3.1  
SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         28   5.4  
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      27   9.5  
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)                       27   9.5  

>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 169 YLKEKKGEVIKEAVKRLIENGKRNTMDFATSYGQRME 279
           + +E+ GE   EA KRLI+ GK+  M F    G+R++
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIM-FLLYIGKRIK 711


>SB_24908| Best HMM Match : Transglut_C (HMM E-Value=0.028)
          Length = 202

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +1

Query: 91  DDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFATSYGQ 270
           D   + ++   VVIG     I K +    EK+   I   VK  +  G RNT D A    Q
Sbjct: 29  DVTFSYEVQSDVVIGSDFNVIVKANNKGSEKRSVDISITVKSAMYTG-RNTHDVAKLLRQ 87

Query: 271 RME 279
           R+E
Sbjct: 88  RVE 90


>SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 242 PWTSLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQKGPSR 370
           PWT  P     W  + + L+P P  +DL R     HK++  SR
Sbjct: 46  PWTRGPYK-MAWAFSDENLVPEPTQADLERVRRLRHKRRRRSR 87


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 169 YLKEKKGEVIKEAVKRLIENGKRNTMDFATS 261
           ++  KK  +IKEA+KR+++N +R  +   TS
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRRLKIPKVTS 205


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 120  ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHHGLRYQLWTKDGKEIVK 293
            E RH    +  RQ    ++GK+    +  +EA +R+R E+   ++ Q   KD K+ +K
Sbjct: 911  EERHLREEEEERQRKEAAKGKKEEEEKKEKEAEERRRAEDEERIKKQA-EKDRKKAIK 967


>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 242 VFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 126
           +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 133 MFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 320 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESL 448
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQL 600


>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
          Length = 148

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 123 THIQLLRQYVISSWCKCGVXSQRTHGEDEGKQSQ 22
           TH  L++   + SW  CG   +R   +D G +SQ
Sbjct: 103 THSGLIK--TLHSWSACGEIKERNQHKDRGAKSQ 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,079
Number of Sequences: 59808
Number of extensions: 341943
Number of successful extensions: 1072
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)