Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20191
         (532 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.52 
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    26   0.68 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   0.91 
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   3.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   4.8  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 26.6 bits (56), Expect = 0.52
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 341 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLESLPPCWKTTEFTLRXCHRDKQ 517
           Q  +Q+   + Q  +  + QQ C +  Q+Q QQ+ L +     W TT    R   R +Q
Sbjct: 192 QQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLW-TTVVRGRPSQRHRQ 249



 Score = 23.0 bits (47), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 341 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLESLP 463
           Q  +Q+   RPQ  RP + +    R  QR+  +  L+E  P
Sbjct: 463 QQPQQQQQQRPQQQRPQQQRPQQQRSQQRKPAKPELIEVSP 503


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 0.68
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 71  PHLHQELMTYWRSSCI*VSSLVNTRPLSPN 160
           P  HQE MT WR     +      RP +P+
Sbjct: 102 PMSHQETMTLWREVAAALDGKAKCRPRTPS 131


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 339 VKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKVYPRVG 473
           VK+  K+ D  A   I+ +N   I  G  K   S K+ W   P++G
Sbjct: 681 VKIETKKIDIKAAPRIEAKNDAYIPKGGDKKIISTKLQWNAKPKIG 726


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 144  LVFTNDDTHIQLLR---QYVISSWCKCGVXSQRTHGEDEGKQS 25
            LV  N+   +QL      +++S+WC   +    TH  D  K S
Sbjct: 1408 LVNLNNQKRVQLTGAKVHHIMSNWCYAEMTIDTTHTADGSKLS 1450


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 115 YMSVVIGEYETAIAKCSEYLKEKKGEV 195
           YM  +I + E    +C + LKEK  +V
Sbjct: 550 YMEAIIVDTEKTARRCIQILKEKMLDV 576


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,196
Number of Sequences: 2352
Number of extensions: 11228
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49051644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)