Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20191
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.29 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   3.6  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   4.8  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    27   6.3  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   6.3  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   6.3  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 112 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 225
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 198 DNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVXSQRTHGEDEG 34
           DN + +  Q FR+ G S +     +  +       ISSW +C        GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 177 GKEGRGYQGSREASDRKRQEEHHGLRYQLWTKDGK 281
           G+E R Y   R   DR+RQ++    R   W  D +
Sbjct: 846 GREHRDYDRDRSQIDRRRQDDMGARRRSRWGDDDR 880


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 115 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 201
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 270 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 298


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 115 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 201
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 271 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 299


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 151 IAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFATSYGQ 270
           I  CS++L EKKG+  K     + ++   N+  +A  YG+
Sbjct: 86  IVNCSQFLSEKKGDQ-KLDYGEMAKSAMENSYGWAKKYGK 124


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -2

Query: 252 EVHGVPLAVFDQTLHGFLDNLSLLFLQI----FRAFGDSGLVFTNDDTHIQLLRQ 100
           +  G+P    +Q L  F  N  +  L+I     R  GD+ +VFTN++ +   L++
Sbjct: 8   QCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKK 62


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -2

Query: 252 EVHGVPLAVFDQTLHGFLDNLSLLFLQI----FRAFGDSGLVFTNDDTHIQLLRQ 100
           +  G+P    +Q L  F  N  +  L+I     R  GD+ +VFTN++ +   L++
Sbjct: 8   QCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,122
Number of Sequences: 27780
Number of extensions: 250437
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)