Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20190
         (373 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   2.3  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    20   7.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   9.4  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    20   9.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    20   9.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    20   9.4  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 301 SQHLQKLVKGR*RVVVPKICSSVVCPYXW 215
           SQ+  K+ K     ++P +C+ ++  + W
Sbjct: 97  SQYRVKIGKFTPEHIIPDLCTHIIFAFGW 125


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 100 LSIFAILRGDESGPDPVGMVPRMVS 26
           +S+FAI R  +  PDP    P   S
Sbjct: 378 ISMFAIHRDPQYFPDPEKFDPERFS 402


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 45  IPTGSGPLSSPLR 83
           +PT S P SSP++
Sbjct: 223 VPTKSSPRSSPVQ 235


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 45  IPTGSGPLSSPLRMAKMLNEKVNVDN 122
           IP    P + P  +    N  VNVDN
Sbjct: 174 IPGQLEPANVPQMITLTFNGAVNVDN 199


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 285 FWRCWDRGSS 314
           FW CW+  +S
Sbjct: 111 FWNCWNGEAS 120


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 285 FWRCWDRGSS 314
           FW CW+  +S
Sbjct: 111 FWNCWNGEAS 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,676
Number of Sequences: 336
Number of extensions: 1449
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)