Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20190
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    24   6.7  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    24   8.8  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 DNDTSPAFDEFLEMLGQRIKLKDHKGYRGG 343
           +ND+      FL+   +++K+KDH    GG
Sbjct: 242 NNDSPTEKSNFLQNGVEKVKIKDHDDELGG 271


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 182 VERKVQXWSSLPXVRTDYGRTDFXDNDTSPAFD 280
           ++RK   + ++     ++GRT    N  SP FD
Sbjct: 503 IDRKPSSFITVTTSGREHGRTPIRSNTFSPTFD 535


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 370 SAGVPRHIKTSSVTFVIFQLDPLSQHLQKLV 278
           SAG P  I+ +++  + FQL P    ++  V
Sbjct: 223 SAGGPTRIEKANIALIQFQLSPPKPDMENQV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,672
Number of Sequences: 5004
Number of extensions: 22481
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)