Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20190
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    29   1.5  
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413...    29   1.5  
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694...    27   6.2  
05_04_0126 + 18252594-18256922                                         26   8.2  
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619...    26   8.2  

>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 257 NDTSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGH 361
           +D    +DE +  L + + LK HK  R  LD T H
Sbjct: 302 DDQEKYYDELVSYLEEELGLKMHKARRFDLDCTNH 336


>05_01_0495 -
           4136871-4136906,4137043-4137171,4137545-4137694,
           4137782-4137847,4138124-4138168,4139022-4139102,
           4139202-4139283,4139571-4139642,4140473-4140573,
           4140690-4140806,4140929-4141249
          Length = 399

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 264 RHRPLTSFWRCWDR 305
           R RPL  FWR WDR
Sbjct: 258 RRRPLPEFWRDWDR 271


>01_06_1604 +
           38567374-38567391,38567505-38567636,38569377-38569445,
           38569545-38569775,38570883-38571013,38571471-38571629,
           38573078-38573366
          Length = 342

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = +3

Query: 9   LLRLRTETMRGTIPTGSGPLSSPLRMAK-----MLNEKVNVDNFMAVTCLNAXSLIAAFD 173
           +LR   E  R     G G    P   A+     ++  K+N+D        NA S + +FD
Sbjct: 13  ILRRSREEKRRLSEGGGGASQQPQGPAEDDYCPVIGSKINMDGISDQEVANAYSFVFSFD 72

Query: 174 ERVLNERFKXGVL 212
           E + + + + G L
Sbjct: 73  EALRSIKLEEGRL 85


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 6    ILLRLRTETMRGTIPTGSGPLSSPLRMAKMLNEKVN-VDNFMAVTCLNAXSLIAA--FDE 176
            +LL+LR        P+ S  +  PLR A ++  K+N ++N   ++ + A S   A   + 
Sbjct: 911  VLLKLRRLLAGQVDPSTSHEMGKPLRSAVLIPRKINKMENMEVLSNVKAYSRNGAELKEI 970

Query: 177  RVLNERFKXGVL 212
            R L +  K GV+
Sbjct: 971  RKLGQLRKLGVV 982


>01_01_0009 +
           57658-60086,60855-60935,61094-61295,61385-61905,
           61996-62114,62248-62345
          Length = 1149

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +2

Query: 185 ERKVQXWSSLPXVRTDYGRTDFXDND-TSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGH 361
           +R V+  S    V        F  ND TSP  DE  + L +  K  D +GY+  +    H
Sbjct: 669 DRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,524,143
Number of Sequences: 37544
Number of extensions: 154900
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)