Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20190
         (373 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   5e-04
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.52 
SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)               30   0.52 
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.69 
SB_23377| Best HMM Match : WH1 (HMM E-Value=2.8)                       28   2.1  
SB_11279| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_58448| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_685| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.4  
SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)                      27   6.4  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      26   8.5  
SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)                     26   8.5  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 26   8.5  

>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 263 TSPAFDEFLEMLGQRIKLKDHKGYRGGLD 349
           +SPAFDEFL ++G++++LK   GYR  LD
Sbjct: 459 SSPAFDEFLNLIGKKVRLKGFDGYRAQLD 487


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 248 FXDNDTSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGH-TGTE 373
           F +   S  F+ FL++LG R++L   +GYRGGLDV    TG++
Sbjct: 466 FSNETGSEEFNRFLKLLGDRVELHGWQGYRGGLDVKNDMTGSQ 508


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 196  NLSFNTRSSKAAINDXAFRQVTAMKLSTLTFSLSIFAILRGDESGPDPVGMVPRMVSVRS 17
            N  ++T  S++A+N  +  QV A    T   S   + I+ GDE G   +     ++SV S
Sbjct: 3778 NKLYSTSISESALNGSSVIQVAATDADTGINSRLTYRIISGDEQGHFAINASTGLISVNS 3837


>SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)
          Length = 1035

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 248 FXDNDTSPAFDEFLEMLGQRIK 313
           F + + SPAFD FLE LG R++
Sbjct: 338 FENQEHSPAFDAFLESLGDRVQ 359


>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 206 SSLPXVRTDYGRTDFXDNDTSPAFDEFLEMLGQRIKLK 319
           +S+P +  D   T+F +N+TS  + EF+E L +R+ +K
Sbjct: 83  TSIPYLADDL--TNFKENETSLLYTEFIEYLEERLLVK 118


>SB_23377| Best HMM Match : WH1 (HMM E-Value=2.8)
          Length = 355

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  NEKVNVDNFMAVTCLNAXSLIAAFDERVLNERFKXGVLYXKY 224
           +E   +D    +    A  +I  +DE   +  FK G++Y K+
Sbjct: 312 DEVETLDQIQVIAHPQASDMIVKYDEHSASRAFKFGIIYQKF 353


>SB_11279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 239 RTDFXDNDTSPAFDEFLEMLGQRIKLKD 322
           RTD   N  SP+FDE  E +    +LKD
Sbjct: 31  RTDIAKNTLSPSFDEKFEWMIPEAQLKD 58


>SB_58448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 264 RHRPLTSFWRCWDRGSS 314
           R + LTS WR W RGSS
Sbjct: 222 RLQQLTSRWRSWHRGSS 238


>SB_685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 295 AGTEDQVERSQRLPRRS*CDG 357
           AGT +Q+ER++ LP R  C G
Sbjct: 57  AGTREQLERTRTLPVRRTCTG 77



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 295 AGTEDQVERSQRLPRRS*CDG 357
           AGT +Q+ER++ LP R  C G
Sbjct: 133 AGTREQLERTRTLPVRLTCTG 153


>SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)
          Length = 701

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 194 VQXWSSLPXVRTDYGRTDFXD--NDTSPAFDEFLEMLGQRIKLKDH 325
           V+   SL   + +    D+ D  N+  P F EF +M+ ++ ++K+H
Sbjct: 569 VEKLPSLLKNKWEENTVDYADEHNNAYPTFHEFTQMIQKQARIKNH 614


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 209 SLPXVRTDYGRTDFXDNDTSPAFDEFLEMLGQRIK--LKDHKGYRGGLDVTGHT 364
           +LP  R D+  ++    DT   F+E  E L Q I+  ++ +  +   L   GH+
Sbjct: 727 ALPSTRLDFLMSEVNQADTFVTFEEMTEKLVQEIRHYIEAYSIFPSKLSFIGHS 780


>SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)
          Length = 360

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 241 SSVVCPYXW*RTPXLNLSFNTRSSKAAIND 152
           SS VCP+ +  T   N S N +++K  +ND
Sbjct: 281 SSPVCPFLFEPTLLENTSTNLKANKLMVND 310


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 241 SSVVCPYXW*RTPXLNLSFNTRSSKAAIND 152
           SS VCP+ +  T   N S N +++K  +ND
Sbjct: 229 SSPVCPFLFEPTLLENTSTNLKANKLMVND 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,956,835
Number of Sequences: 59808
Number of extensions: 186680
Number of successful extensions: 444
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)