Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20190
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical pr...    48   2e-06
Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical p...    48   2e-06
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    48   2e-06
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    46   1e-05
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    46   1e-05
AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical ...    28   2.4  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    27   3.2  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    27   4.3  

>Z74045-4|CAA98554.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +2

Query: 263 TSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGHT 364
           ++P+FDEFL+ LGQR+ LK  + Y+GGLD  G T
Sbjct: 327 STPSFDEFLDFLGQRVTLKGFEAYKGGLDTRGDT 360


>Z74032-11|CAA98469.2|  924|Caenorhabditis elegans Hypothetical
           protein T27F2.2 protein.
          Length = 924

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +2

Query: 263 TSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGHT 364
           ++P+FDEFL+ LGQR+ LK  + Y+GGLD  G T
Sbjct: 327 STPSFDEFLDFLGQRVTLKGFEAYKGGLDTRGDT 360


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 6   ILLRLRTETMRGTIP-TGSGPLSSPLRMAKMLNEKVNVDNFMAVTCLNAXSLIAAFDERV 182
           I+LR R  T+   +  TG     S  RMAK+L E++  + F  V       LI  +DE V
Sbjct: 230 IILRTRKGTIHEIVSATGLADRPSASRMAKLLCEEITTEQFSPVAFPGGSELIVQYDEHV 289

Query: 183 LNERFKXGVLYXK 221
           L   +K GV+Y K
Sbjct: 290 LTNTYKFGVIYQK 302



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 248 FXDNDTSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGHTGT 370
           F +   SPAFDEFL M+G  ++L   + YRGGLD T H  T
Sbjct: 312 FGNPHGSPAFDEFLSMIGDSVQLNGFQKYRGGLD-TAHNQT 351


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 6   ILLRLRTETMRGTIP-TGSGPLSSPLRMAKMLNEKVNVDNFMAVTCLNAXSLIAAFDERV 182
           I+LR R  T+   +  T      S  RMAK+L E++  + F  V       LI  +DE V
Sbjct: 300 IILRTRKGTIHEIVSATALADRPSASRMAKLLCEEITTEQFSPVAFPGGSELIVQYDEHV 359

Query: 183 LNERFKXGVLYXK 221
           L   +K GV+Y K
Sbjct: 360 LTNTYKFGVIYQK 372



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 248 FXDNDTSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGHTGT 370
           F +   SPAFDEFL M+G  ++L   + YRGGLD T H  T
Sbjct: 382 FGNPHGSPAFDEFLSMIGDSVQLNGFQKYRGGLD-TAHNQT 421


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 6   ILLRLRTETMRGTIP-TGSGPLSSPLRMAKMLNEKVNVDNFMAVTCLNAXSLIAAFDERV 182
           I+LR R  T+   +  T      S  RMAK+L E++  + F  V       LI  +DE V
Sbjct: 231 IILRTRKGTIHEIVSATALADRPSASRMAKLLCEEITTEQFSPVAFPGGSELIVQYDEHV 290

Query: 183 LNERFKXGVLYXK 221
           L   +K GV+Y K
Sbjct: 291 LTNTYKFGVIYQK 303



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 248 FXDNDTSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGHTGT 370
           F +   SPAFDEFL M+G  ++L   + YRGGLD T H  T
Sbjct: 313 FGNPHGSPAFDEFLSMIGDSVQLNGFQKYRGGLD-TAHNQT 352


>AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical
           protein W06H8.2 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 233 YGRTDFXDNDTSPAFDEFLEMLGQRIKLKDHKG 331
           YG +DF D DT   F + +E   + +K++  +G
Sbjct: 407 YGLSDFSDEDTVKRFGKAVEEFAELLKIQASRG 439


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 196 NLSFNTRSSKAAINDXAFRQVTAMKLSTLTFSLSIFAILRGDESGPD 56
           NL+FN R ++   ++  F +  A + S  T+  +     RG++ GPD
Sbjct: 672 NLTFNERIAQMGGDNGRFSRKLAAETSFETYFENAIDSWRGEDQGPD 718


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 108 LFR*AFSPFLEGTKAALIRWVWFLAWSLFEASEVSR 1
           LF     PF+      ++ WV++L   +F+   V+R
Sbjct: 277 LFLIVLRPFMNDVDTCVVPWVFYLTHPIFQKKSVNR 312


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 108 LFR*AFSPFLEGTKAALIRWVWFLAWSLFEASEVSR 1
           LF  A  PF+      ++ WV++L   +F+   V++
Sbjct: 281 LFLVALRPFMNDVDTCVVPWVFYLTHPIFQKKSVNQ 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,897,900
Number of Sequences: 27780
Number of extensions: 130320
Number of successful extensions: 334
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)