Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20190
         (373 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    27   3.0  
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro...    26   7.0  
At1g67590.1 68414.m07700 remorin family protein contains Pfam do...    26   9.2  
At1g66245.1 68414.m07520 hypothetical protein                          26   9.2  

>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 205 PXLNLSFNTRSSKAAINDXAFRQVTAMKLSTLTFSLSIFAILRGDESGPDP 53
           P ++ S ++ +S A +N       ++   S+ T S + +AILR D   P P
Sbjct: 80  PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGEDPTP 130


>At1g04160.1 68414.m00406 myosin family protein contains Pfam
            profiles: PF02736 myosin N-terminal SH3-like domain,
            PF00063 myosin head (motor domain), PF00612 IQ
            calmodulin-binding motif, PF01843: DIL domain
          Length = 1500

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 254  DNDTSPAFDEFLEMLGQRIKLKDHKGY 334
            +++ + AFD  +EM+G  I+ +D  G+
Sbjct: 1138 ESEKTSAFDRLIEMIGSAIENEDDNGH 1164


>At1g67590.1 68414.m07700 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 347

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 21  RTET-MRGTIPTGSGPLSSPLRMAKMLNEKVNV 116
           RT T +R T P G  P++SP+R A    E V V
Sbjct: 166 RTATPVRATTPVGRSPVTSPVR-ASQRGEAVGV 197


>At1g66245.1 68414.m07520 hypothetical protein
          Length = 287

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 2   RDTSEASNRDHARNHTHRIRAAFVPSKNGE 91
           RD  E SNR+ ARN   ++      SKNGE
Sbjct: 138 RDRMEGSNRNGARNRVDQLEGF---SKNGE 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,504,947
Number of Sequences: 28952
Number of extensions: 122794
Number of successful extensions: 278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)