Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20189
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    28   0.83 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   1.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.4  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.8  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   7.8  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 243 DGSRNTMEYCYKLWVGNGQHIVRKYFPY 326
           +G+ + +EYC +L V  G H++ + + Y
Sbjct: 134 NGNTSGLEYCLRLLVNYGDHVLTEKYTY 161


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 225 VNNLIIDGSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNLA 389
           V+N I+D   +  ++C ++W G     +R ++  N    ++    K IY +   A
Sbjct: 253 VHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRRA 306


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 253 GTPWSTATSCGSATDSTLSESTSP 324
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 193 VLVFQALTDSAVVVTGEDAVVQFLLXFFV 107
           +  F  +T   V+V  EDAVV+F+L   V
Sbjct: 178 IYFFLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 250 VGTPWSTATSCGSATDSTLSESTSPITLDSSWP 348
           V TP +   S  ++T     ++TSPI   SS P
Sbjct: 208 VNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTP 240


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 321 PYNFRLIMAGNFVKLIYRNYNLALKLGPTLDPANER 428
           P N   +   NF  +++R+  +   + PT  PAN R
Sbjct: 362 PSNSEYLKPLNFYLVVFRDGIITFHMNPTPHPANVR 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,428
Number of Sequences: 5004
Number of extensions: 31228
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)