Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20189
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1707 - 39317617-39318358,39318624-39318709 31 0.36
01_06_1705 + 39312648-39314246 31 0.63
03_04_0206 - 18493178-18495310 28 4.4
02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594... 27 5.8
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 27 7.7
06_01_0198 + 1529190-1530371 27 7.7
02_05_1127 + 34292894-34293284,34293948-34295443 27 7.7
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 7.7
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330... 27 7.7
>01_06_1707 - 39317617-39318358,39318624-39318709
Length = 275
Score = 31.5 bits (68), Expect = 0.36
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -3
Query: 208 GALALVL-VFQALTDSAVVVTGEDAV--VQFLLXFFVRTAHAYRGHFS--DAGADGEHAR 44
GAL VL + L+ A V+ +DA F L F+ H Y F DA AR
Sbjct: 123 GALNSVLQTIRKLSPRAFVLVEQDAGHNAPFFLGRFMEALHYYAALFDALDAALPRYDAR 182
Query: 43 REHHEKFHYGS 11
R E+FH+G+
Sbjct: 183 RARVEQFHFGA 193
>01_06_1705 + 39312648-39314246
Length = 532
Score = 30.7 bits (66), Expect = 0.63
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -3
Query: 208 GALALVL-VFQALTDSAVVVTGEDAVVQ--FLLXFFVRTAHAYRGHFS--DAGADGEHAR 44
GAL VL + L+ A V+ +DA F L F+ H Y F DA AR
Sbjct: 380 GALNSVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDAR 439
Query: 43 REHHEKFHYGS 11
R E+FH+G+
Sbjct: 440 RARVEQFHFGA 450
>03_04_0206 - 18493178-18495310
Length = 710
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 106 RTAHAYRGHFSDAGADGEHARREHHEKF 23
+ H YRG+F D + E R+E + KF
Sbjct: 376 KNLHVYRGNFDDFESGYEQKRKEMNRKF 403
>02_05_1313 -
35658599-35658683,35659231-35659313,35659394-35659489,
35659615-35659693,35659775-35659852,35659989-35660030,
35660435-35660532,35660628-35660747,35660840-35660926
Length = 255
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +1
Query: 244 TEVGTPWSTATSCGSATDSTLSESTSPITLDSS 342
+++G+P T ++ GS++ + SE T+P ++ S+
Sbjct: 167 SQIGSPAKTYSAMGSSSSNGFSEMTTPTSVKSN 199
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3
Query: 343 MMSLKL*GKYFLTMCCPLPTHSL*QYSMVFRLPSMIRLLTYILDD 209
MM L + GK + CP+P+HSL SMV R + L+ Y LD+
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGAT---LVPYYLDE 192
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 453 FPYHRRMQVSRSRDQEWGRA 394
F +++R+ VSRS D E+GRA
Sbjct: 286 FCWYQRLHVSRSPDTEYGRA 305
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 99 AVLTKXSRRNCTTASSPVTTTALSVRAWNTRTKARAPS 212
A T+ SRR TT++S T +A + R+ + ++ APS
Sbjct: 8 AQTTEDSRRRATTSTSTPTCSAATSRSASRSSRPLAPS 45
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 271 QYSMVFRLPSMIRLLTYILDDGALALVLVFQAL 173
++ M+ L + RL TYIL GAL +VL+ L
Sbjct: 51 RFFMLAMLQYLKRLATYILSKGALFVVLIVLVL 83
>01_02_0027 -
10331614-10331737,10332435-10332526,10332977-10333055,
10333110-10333408,10335310-10335588
Length = 290
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 398 RPHS*SRERETCIRRW*G 451
R HS RER+ C+R+W G
Sbjct: 26 RLHSGERERKLCVRKWMG 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,063,517
Number of Sequences: 37544
Number of extensions: 231776
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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