Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20189
         (474 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    24   2.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   4.1  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   4.1  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   4.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.2  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    23   7.2  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   9.5  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 268 YSMVFRLPSMIRLLTYILDDGALALVLVFQALTDSAVVVTG 146
           YS+V  +  ++ ++  +++DG LA   VF       +V+TG
Sbjct: 639 YSLVM-MAVLVGIVVQVMEDGILAPSSVFFLAVALQIVITG 678


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 474 PDEVACSFPYHRRMQVSRSR 415
           PDE+   F    R QVS+SR
Sbjct: 568 PDEIGLFFTPSHRFQVSKSR 587


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 267 YCYKLWVGNG---QHIVRKYFPYNFRLIMAGNFVKLIYR 374
           Y  K+ +GN    +H  R+Y   N    ++G+FV   +R
Sbjct: 423 YGNKINIGNTYAEEHYYRRYLTANLSSDLSGDFVDAFFR 461


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 267 YCYKLWVGNG---QHIVRKYFPYNFRLIMAGNFVKLIYR 374
           Y  K+ +GN    +H  R+Y   N    ++G+FV   +R
Sbjct: 423 YGNKINIGNTYAEEHYYRRYLTANLSSDLSGDFVDAFFR 461


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 90  TADISATPALTASTHDANTTRN 25
           TAD S++PA ++ TH   T R+
Sbjct: 236 TADPSSSPAYSSITHYEPTARS 257


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 357 VKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNKR 464
           VK  Y N   A  + PT   A+   A   G++K K+
Sbjct: 56  VKATYANTVSAKTVAPTPQAASHTAAGNSGQKKKKK 91


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 205 LHHPECKLTT*SLTEVGTPWSTATSCGSATDSTLSESTSP 324
           LHHP CK+        G     A SC   ++S+ S   SP
Sbjct: 404 LHHPNCKMN--RKLNSGDLGIGADSCRRESESSDSILLSP 441


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,808
Number of Sequences: 2352
Number of extensions: 8036
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)