Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20189
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical ... 31 0.56
AF078157-1|AAG24071.1| 235|Caenorhabditis elegans Hypothetical ... 31 0.56
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 30 0.98
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical pr... 27 9.1
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 27 9.1
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 27 9.1
AF038604-6|AAB92014.2| 243|Caenorhabditis elegans Hypothetical ... 27 9.1
>AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical
protein F25E5.8b protein.
Length = 176
Score = 30.7 bits (66), Expect = 0.56
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 76 SDAGADGEHARREHHEKFHYGSCLF 2
S+ G G H EHH K H+G L+
Sbjct: 36 SEEGTSGSHKPEEHHHKEHHGHSLY 60
>AF078157-1|AAG24071.1| 235|Caenorhabditis elegans Hypothetical
protein F25E5.8a protein.
Length = 235
Score = 30.7 bits (66), Expect = 0.56
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 76 SDAGADGEHARREHHEKFHYGSCLF 2
S+ G G H EHH K H+G L+
Sbjct: 36 SEEGTSGSHKPEEHHHKEHHGHSLY 60
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 29.9 bits (64), Expect = 0.98
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 229 TT*SLTEVGTPWSTATSCGSATDSTLSESTSPITLDSS 342
+T S T T ST S ++TDST +EST+ T +S+
Sbjct: 185 STTSSTTTTTATSTTESTSTSTDSTTTESTTESTTEST 222
Score = 29.9 bits (64), Expect = 0.98
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 229 TT*SLTEVGTPWSTATSCGSATDSTLSESTSPITLDSS 342
+T S T T ST S ++TDST +EST+ T +S+
Sbjct: 205 STDSTTTESTTESTTESTSTSTDSTTTESTTESTTEST 242
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 229 TT*SLTEVGTPWSTATSCGSATDSTLSESTSPIT 330
+T S T T ST S ++TDST +ESTS T
Sbjct: 225 STDSTTTESTTESTTESTSTSTDSTTTESTSTST 258
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 244 TEVGTPWSTATSCGSATDSTLSESTSPITLDSS 342
T T +T S ++TDST +EST+ T +S+
Sbjct: 242 TSTSTDSTTTESTSTSTDSTTTESTTESTTEST 274
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 102 VLTKXSRRNCTTASSPVTTTALSVRAWNTRTKARAPSS 215
++T+ S + A++PVTT A S+ WN R+ SS
Sbjct: 586 LITEPSNPSTPLATTPVTTAA-SICLWNNDISKRSSSS 622
>Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical
protein F35E2.1 protein.
Length = 345
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 246 GSRNTMEYCYKLWVGNGQHIVRKYFP--YNFRLIMAGNFVKL 365
G N + CY L NG +VR + +NF I+ NFV L
Sbjct: 179 GENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFVIL 219
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 109 QRXRGETVQQHPHR*LRQRCPSELGIREPRQGLHHPECKLT 231
QR + V Q HR L + PS + R G HHP C+ T
Sbjct: 354 QRPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLCRHT 393
>Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical
protein F16D3.6 protein.
Length = 341
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 246 GSRNTMEYCYKLWVGNGQHIVRKYFP--YNFRLIMAGNFVKL 365
G N + CY L NG +VR + +NF I+ NFV L
Sbjct: 179 GENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFVIL 219
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 109 QRXRGETVQQHPHR*LRQRCPSELGIREPRQGLHHPECKLT 231
QR + V Q HR L + PS + R G HHP C+ T
Sbjct: 354 QRPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLCRHT 393
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 109 QRXRGETVQQHPHR*LRQRCPSELGIREPRQGLHHPECKLT 231
QR + V Q HR L + PS + R G HHP C+ T
Sbjct: 354 QRPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLCRHT 393
>AF038604-6|AAB92014.2| 243|Caenorhabditis elegans Hypothetical
protein B0546.5 protein.
Length = 243
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 246 GSRNTMEYCYKLWVGNGQHIVRKYFP--YNFRLIMAGNFVKL 365
G N + CY L NG +VR + +NF I+ NFV L
Sbjct: 179 GENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFVIL 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,811
Number of Sequences: 27780
Number of extensions: 187004
Number of successful extensions: 472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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