Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20189
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 205 LHHPECKLTT*SLTEVGTPWSTATSCGSATDSTLSESTSPITL 333
           LHHP CK+         T  S+A       D   SES+  + L
Sbjct: 400 LHHPNCKIN--RKVHHTTSSSSAAGGEGLADRRGSESSDSVLL 440


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 209 WSPCLGSRIPSSDGQRCRSHR 147
           + P LG  +  S GQ+ R+HR
Sbjct: 118 FKPWLGDGLLISTGQKWRNHR 138


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 225 VNNLIIDGSRNTMEYCYKLWVGNGQHI 305
           + NL   G + ++E     W+G+GQ+I
Sbjct: 243 LTNLGFLGMKESVEVDQLSWLGSGQYI 269


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 225 VNNLIIDGSRNTMEYCYKLWVGNGQHI 305
           + NL   G + ++E     W+G+GQ+I
Sbjct: 281 LTNLGFLGMKESVEVDQLSWLGSGQYI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,963
Number of Sequences: 438
Number of extensions: 2381
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)