Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20189
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19030.1 68414.m02369 hypothetical protein                          30   0.92 
At1g70250.1 68414.m08082 receptor serine/threonine kinase, putat...    28   2.8  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    27   4.9  
At5g15100.1 68418.m01769 auxin efflux carrier family protein con...    27   8.6  

>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 25/87 (28%), Positives = 32/87 (36%)
 Frame = +3

Query: 123 RNCTTASSPVTTTALSVRAWNTRTKARAPSSRM*VNNLIIDGSRNTMEYCYKLWVGNGQH 302
           R C    SP+T T   V A   R K R        N ++      + E    LW G   H
Sbjct: 203 RGCIDLGSPMTATVGEVMAGARRRKYRVAILNQVENEIVKQKLIRSNETDVALWNGKHDH 262

Query: 303 IVRKYFPYNFRLIMAGNFVKLIYRNYN 383
             RK F +     +     KL+  NYN
Sbjct: 263 -YRKEF-HTKETWLQIRTAKLLMENYN 287


>At1g70250.1 68414.m08082 receptor serine/threonine kinase, putative
           similar to to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 799

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 154 LRQRCPSELGIREPRQGLHHPECKLTT 234
           + + CPSEL +     G HHP   +TT
Sbjct: 274 MNETCPSELMVNSSGLGSHHPIACMTT 300


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 234 LIIDGSRNTMEYCYKLWVGNGQHIVRKYFPYNF 332
           +++D      EY  KL + +G     KYFP  F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At5g15100.1 68418.m01769 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 367

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 268 YSMVFRLPSMIRLLTYILDDGALALVL----VFQALTDSAVVVTGEDAVVQFLLXFFVRT 101
           + + + LP MI    ++L DG L + +    +F A   S +    + A++  LL F +  
Sbjct: 238 FRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLGP 297

Query: 100 A 98
           A
Sbjct: 298 A 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,332,715
Number of Sequences: 28952
Number of extensions: 172127
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)