Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20188
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.6  
AM269505-1|CAK30048.1|   10|Tribolium castaneum mlpt peptide 1 p...    20   8.7  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 225 SSWRSLVPR*TPVGSMPCSSDIISQNL 145
           SSW    P+  PVG    +S +  Q L
Sbjct: 35  SSWPGRPPKRAPVGLSLAASHLQQQQL 61


>AM269505-1|CAK30048.1|   10|Tribolium castaneum mlpt peptide 1
           protein.
          Length = 10

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 176 GIDPTGVY 199
           G+DPTG+Y
Sbjct: 3   GLDPTGLY 10


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,041
Number of Sequences: 336
Number of extensions: 1093
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)