Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20188
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    93   2e-20
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    58   6e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    58   8e-10
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    55   4e-09
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 92.7 bits (220), Expect = 2e-20
 Identities = 44/98 (44%), Positives = 56/98 (57%)
 Frame = +2

Query: 92  MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEALLRRRR 271
           MREIVH+QAGQCGNQ+GA FW  I++EHG+D  G+Y GTS+ Q ER++VY+NEA      
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEA------ 54

Query: 272 AAGSMXXXXXXXXXXXXXXXXXXXXXXGNSXRPDNXVF 385
           A G                        GN  RPDN ++
Sbjct: 55  AGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIY 92



 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 35/53 (66%), Positives = 41/53 (77%)
 Frame = +1

Query: 271 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
           +GGKYVPRA+L+DLEPGTMDAV+SG +G LF    +    S GAGN WAKGHY
Sbjct: 55  AGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQS-GAGNIWAKGHY 106


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 58.0 bits (134), Expect = 6e-10
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
 Frame = +1

Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
           +E+G GKYVPR+I +DLEP  +D VR+G Y  LF   QL +     A NN+A+GHY
Sbjct: 54  SETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQL-ITGKEDASNNYARGHY 108



 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +2

Query: 92  MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 193
           MREI+ +  GQ G QIG   WE+   EHGI P G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 57.6 bits (133), Expect = 8e-10
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +2

Query: 95  REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55



 Score = 51.6 bits (118), Expect = 5e-08
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +1

Query: 280 KYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVS-XGAGNNWAKGH 426
           +Y+PRAIL+DLEP  ++ + S  YG L+    + +  +  GAGNNWA G+
Sbjct: 59  RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 55.2 bits (127), Expect = 4e-09
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
 Frame = +1

Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
           +E+G GK+VPR+I +DLEP  +D VR+G Y  LF   Q+ +     A NN+A+GHY
Sbjct: 58  SETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQM-VTGKEDASNNYARGHY 112



 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +2

Query: 92  MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNE 250
           MRE++ +  GQ G QIG   WE+   EHGI P G    T + ++ + + Y N+
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLND 51


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 131 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 232
           N++G    E+++E+  +DPT   +   DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,563
Number of Sequences: 5004
Number of extensions: 17788
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)