Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20188
(430 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 102 9e-23
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 102 9e-23
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 101 3e-22
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 98 3e-21
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 97 3e-21
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 96 1e-20
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 95 2e-20
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 95 2e-20
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 92 2e-19
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 59 1e-09
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 58 2e-09
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 58 2e-09
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 58 2e-09
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 58 2e-09
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 58 2e-09
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 58 2e-09
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 52 1e-07
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 52 1e-07
At4g37190.1 68417.m05265 expressed protein 31 0.33
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 1.0
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 29 1.0
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 27 4.1
At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger) fa... 27 7.1
At3g17410.1 68416.m02224 serine/threonine protein kinase, putati... 26 9.4
At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1 [Ar... 26 9.4
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 102 bits (245), Expect = 9e-23
Identities = 51/98 (52%), Positives = 58/98 (59%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEALLRRRR 271
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEA
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEA------ 54
Query: 272 AAGSMXXXXXXXXXXXXXXXXXXXXXXGNSXRPDNXVF 385
+ G G + RPDN VF
Sbjct: 55 SCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVF 92
Score = 76.2 bits (179), Expect = 9e-15
Identities = 37/67 (55%), Positives = 45/67 (67%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + S G++VPRA+L+DLEPGTMD++RSG YGQ F S GAGN
Sbjct: 41 DLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQS-GAGN 99
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 100 NWAKGHY 106
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 102 bits (245), Expect = 9e-23
Identities = 51/98 (52%), Positives = 58/98 (59%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEALLRRRR 271
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEA
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEA------ 54
Query: 272 AAGSMXXXXXXXXXXXXXXXXXXXXXXGNSXRPDNXVF 385
+ G G + RPDN VF
Sbjct: 55 SCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVF 92
Score = 76.2 bits (179), Expect = 9e-15
Identities = 37/67 (55%), Positives = 45/67 (67%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + S G++VPRA+L+DLEPGTMD++RSG YGQ F S GAGN
Sbjct: 41 DLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQS-GAGN 99
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 100 NWAKGHY 106
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 101 bits (241), Expect = 3e-22
Identities = 41/54 (75%), Positives = 49/54 (90%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
MREI+H+Q GQCGNQIG+KFWE++ +EHGIDPTG Y G SDLQLER++VYYNEA
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEA 54
Score = 79.4 bits (187), Expect = 1e-15
Identities = 39/67 (58%), Positives = 46/67 (68%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + S G+YVPRAIL+DLEPGTMD+VR+G YGQ+F S GAGN
Sbjct: 41 DLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQS-GAGN 99
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 100 NWAKGHY 106
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 97.9 bits (233), Expect = 3e-21
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y+G +DLQLER++VYYNEA
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEA 54
Score = 78.6 bits (185), Expect = 2e-15
Identities = 38/67 (56%), Positives = 46/67 (68%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + S G++VPRA+L+DLEPGTMD+VRSG YGQ+F S GAGN
Sbjct: 41 DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS-GAGN 99
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 100 NWAKGHY 106
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 97.5 bits (232), Expect = 3e-21
Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTS-DLQLERISVYYNEA 253
MREI+H+Q GQCGNQIG+KFWE+I +EHG+DPTG Y G S DLQLERI+VYYNEA
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEA 55
Score = 83.4 bits (197), Expect = 6e-17
Identities = 39/67 (58%), Positives = 47/67 (70%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + SGG+YVPRA+L+DLEPGTMD++RSG YGQ+F S GAGN
Sbjct: 42 DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQS-GAGN 100
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 101 NWAKGHY 107
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 95.9 bits (228), Expect = 1e-20
Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG-TSDLQLERISVYYNEA 253
MREI+H+Q GQCGNQIG+KFWE+I +EHGID TG Y G T+DLQLERI+VYYNEA
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEA 55
Score = 81.8 bits (193), Expect = 2e-16
Identities = 38/67 (56%), Positives = 47/67 (70%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + SGG+YVPRA+L+DLEPGTMD++RSG +GQ+F S GAGN
Sbjct: 42 DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQS-GAGN 100
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 101 NWAKGHY 107
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
MREI+H+Q GQCGNQIGAKFWE+I +EHGID TG Y G S LQLERI VY+NEA
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEA 54
Score = 81.8 bits (193), Expect = 2e-16
Identities = 36/53 (67%), Positives = 42/53 (79%)
Frame = +1
Query: 271 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
SGGKYVPRA+L+DLEPGTMD++RSG +GQ+F S GAGNNWAKGHY
Sbjct: 55 SGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQS-GAGNNWAKGHY 106
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 94.7 bits (225), Expect = 2e-20
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y G S+LQLER++VYYNEA
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEA 54
Score = 79.8 bits (188), Expect = 7e-16
Identities = 36/53 (67%), Positives = 41/53 (77%)
Frame = +1
Query: 271 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
S G+YVPRA+L+DLEPGTMD+VRSG YGQ+F S GAGNNWAKGHY
Sbjct: 55 SCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS-GAGNNWAKGHY 106
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 91.9 bits (218), Expect = 2e-19
Identities = 40/54 (74%), Positives = 46/54 (85%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG G +DLQLERI+VY+NEA
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEA 54
Score = 82.2 bits (194), Expect = 1e-16
Identities = 39/67 (58%), Positives = 47/67 (70%)
Frame = +1
Query: 229 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGN 408
DL L + + SGGKYVPRA+L+DLEPGTMD++RSG +GQ+F S GAGN
Sbjct: 41 DLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQS-GAGN 99
Query: 409 NWAKGHY 429
NWAKGHY
Sbjct: 100 NWAKGHY 106
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 58.8 bits (136), Expect = 1e-09
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +1
Query: 271 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
S G++VPRA+ LDLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 57 SSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 193
MREI+ + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDG 34
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 196
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGM 35
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 196
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGM 35
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 205
MRE + + GQ G Q+G WE+ EHGI P G G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPG 38
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 205
MRE + + GQ G Q+G WE+ EHGI P G G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPG 38
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 193
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXLPVSXGAGNNWAKGHY 429
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF QL + A NN+A+GHY
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL-ISGKEDAANNFARGHY 108
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 193
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 95 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
Score = 50.4 bits (115), Expect = 5e-07
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 283 YVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXL-PVSXGAGNNWAKGHY 429
Y+PRA+L+DLEP ++ +++G Y L+ + L GAGNNWA G++
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYH 109
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 95 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 253
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 283 YVPRAILLDLEPGTMDAVRSGAYGQLFXAGQLXL-PVSXGAGNNWAKGHY 429
Y+PRA+L+DLEP ++ +++G Y L+ + + GAGNNWA G++
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYH 109
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 92 MREIVHLQAGQCGNQIGAKFWEIISEEHGI 181
MREIV +Q G+ N +G+ FW E G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 89 TMREIVHLQAGQCGNQIGAKFWEIISE 169
T +I++ A + G+ GA FWE+ISE
Sbjct: 343 TTYDIIYASAQKGGSAAGALFWEVISE 369
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 113 QAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 205
QA G IG ++W IIS++ G D T YRG
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 176 GIDPTGVYRGTSDLQLERISVYYNEA 253
GI P GV T D++ R SVY N+A
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQA 68
>At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = -2
Query: 180 MPCSSDIISQNLAPIWLPH---CPACRCTISL 94
MP S N +WL CPACR +SL
Sbjct: 139 MPPCSHTFHANCIDVWLSSQSTCPACRANLSL 170
>At3g17410.1 68416.m02224 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 GB:AAC61805 from
[Lycopersicon esculentum]
Length = 364
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 304 GGWRGGHTSRRSPPSQQGLIVVNRDPLEL 218
GG+ GGH R PP + L V+ P+ +
Sbjct: 28 GGYNGGHHQRADPP--KNLPVIQMQPISV 54
>At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1
[Arabidopsis thaliana] GI:15487382; contains Pfam
profile PF00168: C2 domain
Length = 589
Score = 26.2 bits (55), Expect = 9.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 174 CSSDIISQNLAPIWLPHC 121
C ++++ NL P+W P C
Sbjct: 240 CRTEVVDNNLNPMWRPVC 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,136,963
Number of Sequences: 28952
Number of extensions: 107192
Number of successful extensions: 339
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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