Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20187
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   3.5  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   4.6  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   4.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.1  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   6.1  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 219 DVNATPETCPFSCFGVFS*INAITCES 299
           +V A   T  F+CF  F   NA+ C S
Sbjct: 785 NVTARDTTMTFTCFVFFDMFNALACRS 811


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 242 GFGRCINILRKEKIYDSKIENKNFLLYVQI 153
           GFG C+ +L+     D +   K+ L+Y+ +
Sbjct: 698 GFGECLQMLQNHSSPDVRERVKDALMYINV 727


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -3

Query: 233 RCINILRKEKIYDSKIE 183
           R +N+LR++KIY+S+++
Sbjct: 64  RAMNVLRQKKIYESQLQ 80


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 84  YSRXPLGSAPRIADVHGRRCNH 19
           YS   LG+ P++  V+ R CNH
Sbjct: 465 YSIAGLGTNPQLDAVYERECNH 486


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 352 SNLRILFIINKKCF 311
           +NL+IL +IN+KCF
Sbjct: 10  NNLKILEVINEKCF 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,676
Number of Sequences: 5004
Number of extensions: 35477
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)