Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20187
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    29   2.0  
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    29   2.6  
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322...    28   4.6  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     27   6.0  
11_06_0142 - 20564572-20565951                                         27   8.0  
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    27   8.0  
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    27   8.0  

>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 352 SNLRILFIINKKCFLLLYDSHVIAFIYENTP 260
           SNL+ L +IN  CF + +D H I  I  +TP
Sbjct: 831 SNLKTLLLIN--CFCVAFDLHGITSILRHTP 859


>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 342 VFYLLLIKNVFYYYMTHMLLHLS 274
           V+Y+L   +VFYY++TH LL+ S
Sbjct: 630 VYYIL---HVFYYFITHFLLYFS 649


>11_01_0419 +
          3226224-3226756,3228010-3228169,3228256-3228435,
          3228525-3228659,3229262-3229344,3229442-3229535,
          3229649-3229735
          Length = 423

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 20 WLHRRPWTSAIRGAEPSG 73
          WL RRPW++A R  +  G
Sbjct: 4  WLRRRPWSAATRAGDGDG 21


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 26  HRRPWTSAIRGAEPSGCLLYVSSLST*LCMDVSSFECFIKI 148
           H + W SA  G+      L +SS +   C  VSS+E + ++
Sbjct: 476 HMKKWMSAHGGSPSRRTALNISSTAVSPCSSVSSYEQYTRL 516


>11_06_0142 - 20564572-20565951
          Length = 459

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 123 DTSIQSYVLRELTYSRXPLGSAPRIADVHGRRCNHSPSGG 4
           D     Y+L  LT +R  L  A  +  V GRR   SP  G
Sbjct: 113 DRDANPYLLNPLTGARAALPPATALGRVRGRRFVFSPGDG 152


>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  PWTSAIRGAEPSGCLLYVSSLST*LCMDV 121
           PW S  RG EP   L+  ++  +  C+DV
Sbjct: 146 PWYSLARGTEPLTPLMVATAYGSVACLDV 174


>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 334 IKYVD*IKKLYIFNYYHFICSVFSFDILIYSRFALCRDR*RCKNVGAFFE 483
           +K VD    L +  Y++   ++  F+++ ++RF L  D      + +FF+
Sbjct: 58  LKSVDRFNDLVVSVYFYLYNNIVFFNLMTHARFMLLHDSRSEDGIKSFFQ 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,922
Number of Sequences: 37544
Number of extensions: 186210
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)