Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20187
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50726| Best HMM Match : zf-CCHC (HMM E-Value=1.8)                   30   1.2  
SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_57402| Best HMM Match : DEAD (HMM E-Value=0.42)                     28   3.6  
SB_27946| Best HMM Match : DEAD (HMM E-Value=0.42)                     28   3.6  
SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36)                    28   3.6  
SB_9659| Best HMM Match : ResIII (HMM E-Value=0.39)                    28   3.6  
SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)                   28   4.7  
SB_22559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_48295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_47766| Best HMM Match : Ribosomal_L27 (HMM E-Value=2.3)             28   4.7  
SB_46041| Best HMM Match : LIM (HMM E-Value=1.5)                       28   4.7  
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_2065| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)                   27   8.2  

>SB_50726| Best HMM Match : zf-CCHC (HMM E-Value=1.8)
          Length = 389

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP----WTSAIRGAEPSGCL 79
           P  GEW H+RP    W  A  G + SGCL
Sbjct: 107 PRYGEWRHKRPGYEWWPEAAWGPKRSGCL 135


>SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 253 LKGQVSGVALTSLEKKKSMTRKLKIKTFFF 164
           ++ + S + ++S ++KKS TRK+KI  F F
Sbjct: 8   VENETSSIRISSSKRKKSCTRKVKILLFGF 37


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 357 FNLIYVFYLLLIKNVFYYYMTHMLLHLSMKIHQN 256
           +++I++F++ L+ +V Y Y    L H+S+  H N
Sbjct: 100 YHVIWLFHVSLLCHVIYMYHVIWLFHVSLLCHVN 133


>SB_57402| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 428

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCLLYVSSLST*LCMDV 121
           P  GEW H+RP   W   A  G + SGCL   SS +  L  D+
Sbjct: 146 PRYGEWRHKRPGYEWRPEAAWGPKRSGCLARESSTAPSLPCDL 188


>SB_27946| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 751

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCLLYVSSLST*LCMDV 121
           P  GEW H+RP   W   A  G + SGCL   SS +  L  D+
Sbjct: 241 PRYGEWRHKRPGYEWRPEAAWGPKRSGCLARESSTAPSLPCDL 283


>SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36)
          Length = 624

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCLLYVSSLST*LCMDV 121
           P  GEW H+RP   W   A  G + SGCL   SS +  L  D+
Sbjct: 146 PRYGEWRHKRPGYEWRPEAAWGPKRSGCLARESSTAPSLPCDL 188


>SB_9659| Best HMM Match : ResIII (HMM E-Value=0.39)
          Length = 333

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCLLYVSSLST*LCMDV 121
           P  GEW H+RP   W   A  G + SGCL   SS +  L  D+
Sbjct: 127 PRYGEWRHKRPGYEWRPEAAWGPKRSGCLARESSTAPSLPCDL 169


>SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)
          Length = 1244

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP---WT-SAIRGAEPSGCL 79
           P  GEW H++P   WT  A  G + SGCL
Sbjct: 727 PRYGEWCHKKPGYEWTPEAAWGPKRSGCL 755


>SB_22559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 944

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP---WTS-AIRGAEPSGCL 79
           P  GEW H+RP   W S A  G + SGCL
Sbjct: 625 PRYGEWRHKRPGYEWRSEAAWGPKRSGCL 653


>SB_48295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1269

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCL 79
           P  GEW H+RP   W   A  G E SGCL
Sbjct: 759 PRYGEWRHKRPEYEWRPEAAWGPERSGCL 787


>SB_47766| Best HMM Match : Ribosomal_L27 (HMM E-Value=2.3)
          Length = 596

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCLLYVSSLST*LCMDVSS 127
           P  GEW H+RP   W   A  G + SGCL    SL   L   +S+
Sbjct: 507 PRYGEWRHKRPGYEWRPEAAWGLKRSGCLAREPSLPCDLVAAISA 551


>SB_46041| Best HMM Match : LIM (HMM E-Value=1.5)
          Length = 1236

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCL 79
           P  GEW H+RP   W   A  G E SGCL
Sbjct: 739 PRYGEWRHKRPEYEWRPEAAWGPERSGCL 767


>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCL 79
           P +GEW H+RP   W   A  G + SGCL
Sbjct: 740 PRNGEWRHKRPGYEWRPEAAWGPKRSGCL 768


>SB_2065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 5   PPDGEWLHRRP---WT-SAIRGAEPSGCL 79
           P  GEW H++P   WT  A  G + SGCL
Sbjct: 250 PRYGEWCHKKPGYEWTPEAAWGPKRSGCL 278


>SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)
          Length = 1179

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 5   PPDGEWLHRRP---W-TSAIRGAEPSGCLLYVSSLST*LCMDVSS 127
           P  GEW H+RP   W   A  G + SGCL    S +  L  D+++
Sbjct: 681 PRYGEWRHKRPGYEWRPEAAWGPKRSGCLAREPSTAPSLPCDLAA 725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,669
Number of Sequences: 59808
Number of extensions: 236649
Number of successful extensions: 582
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)