Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20187
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-6|AAB52264.2|   83|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    28   4.1  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF000266-7|AAC71173.1|  212|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U97002-6|AAB52264.2|   83|Caenorhabditis elegans Hypothetical
           protein K09H11.5 protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 256 QLKGQVSGVALTSLEKKKSMTRKLKIKTFFFTCKLLNFDETFKTRHIHTKLC 101
           Q+  ++  +++T + K K  T K ++KTF   C+  +       +H   ++C
Sbjct: 12  QIPEKILNLSITEIVKAKISTEKHQVKTFLEYCRKFSIATLSWFKHTQQRIC 63


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 393 TNKMIIIKNV*FFNLI-YVFYLLLIKNVFYYYM 298
           T K I + N   + ++ Y++ +L+IKN F++ M
Sbjct: 148 TEKPITVANTHIYKILAYLYVILIIKNFFFFLM 180


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 226 LTSLEKKKSMTRKLKIKTFFFTCKLLNFDETFKTRHIHTKL 104
           L+SLE     T K  I T F+T   L + +T KT  + TKL
Sbjct: 389 LSSLETCFLKTTKPVISTLFYTIIFLQYSDTVKT--LQTKL 427


>Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical
           protein C17H1.13 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 227 INILRKEKIYDSKIENKNFLLYVQIIKF**NIQNSTHPYKVMCLE 93
           I +  K+K  +S++ENK   L ++  +F  NIQN  H  ++   E
Sbjct: 10  IALADKKKSNNSELENKRNELQLEEEQFRSNIQNMEHSMRMQAKE 54


>Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical
           protein T05A1.3 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 485 ISKKAPTFLHLHRSRHRANRLYINISNENTEQIK 384
           +S    T+LH H   H  N + +++ N + +++K
Sbjct: 268 LSNNKLTYLHDHAFEHLTNLILLDLKNNSLKEVK 301


>U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical
           protein T28D9.4 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 351 LIYVFYLLLIKNVFYYYMTHMLLHLSMKIH 262
           LIY F LLL+   + Y ++ ++L+L  +I+
Sbjct: 146 LIYSFLLLLVDRQYLYPLSQVILYLFTRIN 175


>AF000266-7|AAC71173.1|  212|Caenorhabditis elegans Hypothetical
           protein W08F4.9 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 458 HLHRSRHRANRLYINISNENTEQIK 384
           H+H   H+  +++IN+ N   E+IK
Sbjct: 21  HIHEVLHQNRQIHINLENGMNEEIK 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,731
Number of Sequences: 27780
Number of extensions: 198601
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)