Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    28   0.76 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   1.3  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.3  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    26   4.1  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   5.4  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   5.4  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +1

Query: 25  NKFDSRRK-TRAPALGSPPMSAALY-VPPGRR*NEVPLSLQLE*RDSFQLTKARKETLDS 198
           ++F+++RK T+ P +      + +  +P     +E   + + E  D+FQ+ KA K++L+ 
Sbjct: 77  HRFNTKRKITKLPPVSQDEFESIIEDLPESLSGSESETNSESE-EDNFQIEKAFKQSLNI 135

Query: 199 SAVLKPLHDDNQRSTS 246
             V     ++NQR+ S
Sbjct: 136 GKVDSADENNNQRTNS 151


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 53  ERLRSVRPLCLPHSMCHLDAVRMKCHYRCNWNKEIVFNSQKLVKRR 190
           +R ++ RP  LP  +  LD  R     + +   EI++NS++ V++R
Sbjct: 275 QRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKENVEKR 320


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 384 WHWLICIWRIFSSNWVEEKVDLPSDL 461
           W   + IW IFS + + E + +PSD+
Sbjct: 487 WDKTVRIWDIFSRSGIVEPLPIPSDV 512


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 302 KFKSIQNYRGQCYSLNGILEVERWLSS 222
           KF+S+++ R  C+S  G L+ +RW S+
Sbjct: 22  KFQSVKHIRPSCFSSFG-LQAKRWNST 47


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 529 TLKLDPLPGVVGPRVQELQKCFRRSEGRSTFSSTQLEENILQIHISQCH 383
           +LK  PL      RV EL KC +  E  +     Q+E N+   H S C+
Sbjct: 555 SLKQRPLRSAEYVRVCEL-KCLQEEEFDNKVLLEQVESNVQTDHNSPCN 602


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 74  PLCLPHSMCHLDAVRMKCHYRCNWNKEIVFNSQKL 178
           P CL HS    D    KC   CN +++ +    +L
Sbjct: 151 PFCLDHSYILEDQQHNKCLVHCNQSRKDLLGCSQL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,858
Number of Sequences: 5004
Number of extensions: 45689
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)