Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809...    29   1.8  
11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121     29   3.1  
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798...    29   3.1  
02_02_0357 + 9360108-9360754,9363732-9364137                           28   4.1  
02_02_0355 + 9312814-9313650                                           28   4.1  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    28   4.1  
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710...    27   7.2  

>03_05_0654 +
           26479416-26479605,26480058-26480246,26480674-26480989,
           26481286-26481844
          Length = 417

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 169 TKARKETLDSSAVLKPLHDDNQRSTSRIPFRE*H 270
           T    E++ S+ +LKP    NQ++   IPF + H
Sbjct: 278 TAGDSESISSNTMLKPWESSNQQNNKSIPFTKMH 311


>11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121
          Length = 196

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 381 RWHWLICIWRIFSSNWVEEKVDLPSD 458
           RW WLI  WR +   W + +VD   D
Sbjct: 133 RWMWLIWPWRRWIQPWRQRRVDPVGD 158


>02_02_0219 +
           7985152-7985575,7985818-7985894,7986067-7986127,
           7986276-7986519,7986613-7987006,7987292-7987729
          Length = 545

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 49  TRAPALGSPPMSAALYVPPGRR*NEVP 129
           TRA     PPM AA   PPGR  + +P
Sbjct: 339 TRAAMAAPPPMFAAAVAPPGRDHHRLP 365


>02_02_0357 + 9360108-9360754,9363732-9364137
          Length = 350

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 518 RPAAGGCGSTRSGTSEMFSKIGREVNFFLYPVGGKYSPDTYQPV 387
           R AAGG  +  + T EM + IG    +   P  G+Y   T +P+
Sbjct: 90  RGAAGGEDNAATSTEEMATSIGVPATYRSRPETGRYWTPTTRPL 133


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 518 RPAAGGCGSTRSGTSEMFSKIGREVNFFLYPVGGKYSPDTYQPV 387
           R AAGG  +  + T EM + IG    +   P  G+Y   T +P+
Sbjct: 110 RGAAGGEDNAATSTEEMATSIGVPATYRSRPETGRYWTPTTRPL 153


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 329 FYSYNSLKTKFKSIQNYRGQCYSLNGILEVERWLSSWSGFNTA 201
           F +   L+T FK  + Y GQ     G L      SS+ GF T+
Sbjct: 527 FEASTGLQTNFKGFEPYSGQQAGYTGSLPSTGHQSSYMGFETS 569


>10_03_0016 -
           7099862-7099967,7100059-7100357,7101862-7102171,
           7104402-7105054,7105266-7105554,7106549-7106634
          Length = 580

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 518 RPAAGGCGSTRSGTSEMFSKIGREVNFFLYPVGGKYSPDTYQP 390
           R AAGG  +  + T EM + IG    +   P  G+Y   T +P
Sbjct: 395 RGAAGGEDNAATSTEEMATSIGVPAMYRSRPETGRYWTQTRRP 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,919,997
Number of Sequences: 37544
Number of extensions: 304010
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)