Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)                31   0.45 
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      31   0.59 

>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
          Length = 652

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 22  DNKFDSRRKTRAPALGSPPMSAALYVPPGRR*NEVPLSLQL-E*RDSFQLTKARKET-LD 195
           +N F S ++  A A G+ P+S  L  PP  + N   +++ L E   SF+L     E+   
Sbjct: 62  NNYFFSSKEANAAANGNDPLSQYLNWPPNTQFNTSAIAMILGEPGPSFRLPYGDSESGYS 121

Query: 196 SSAVLKPLHDDNQRSTS 246
           S   L PL   + RS S
Sbjct: 122 SDEALSPLSAASYRSAS 138


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 80   CLPHSMCHLDAVRMKCHYRC 139
            C+P  M H+D   +KC YRC
Sbjct: 1136 CVPQCMLHVDVFPIKCSYRC 1155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,577
Number of Sequences: 59808
Number of extensions: 331898
Number of successful extensions: 981
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)