Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     26   0.69 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.5  

>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = -3

Query: 449 EVNFFLYPVGGKYSPDTYQPVPS*CPSRALYISQVFLVIYFYSYNSLKTKFKSIQNYRGQ 270
           E NF  +P   KY PD Y    S   SR +   Q  L   + SYNS   +  S + Y   
Sbjct: 184 EANFQPHPYYPKYEPDAY-ITASTERSRGVTGDQPSLQSSYESYNSSGLRSYSSETYPNP 242

Query: 269 CYSLN 255
             SL+
Sbjct: 243 GSSLS 247


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 200 EESNVSLRAFVS*KLSLYSNCSDSG 126
           E    +++A++   LS++ NC D+G
Sbjct: 419 EAIKAAIKAYLEAFLSVFQNCFDTG 443


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,478
Number of Sequences: 2352
Number of extensions: 11660
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49474503
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)