Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA...    29   5.3  
AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-P...    28   7.0  

>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
           protein.
          Length = 1660

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 414 IFSRYISASAIVMSFESTIYIPSLFSYXXXXX**S*N*VQINSKL*GAVLFSKRNPRGRA 235
           +FS+  +ASA+   F    YIP  F Y           + + SKL  +++FS  +  G  
Sbjct: 314 LFSKASTASAVAAIFWFLTYIPYSFGYYYYER------LSLMSKLLISLIFS-NSALGFG 366

Query: 234 LVVVVEWFQYGRGI 193
           + V+V W   G GI
Sbjct: 367 IHVIVMWEGTGEGI 380


>AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-PB,
            isoform B protein.
          Length = 2133

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 154  DSFQLTKARKETLDSSAVLKPLHDDNQRSTSR 249
            +S  LTK +K+T DSS++ K   D+N +  S+
Sbjct: 1186 NSASLTKIKKKTTDSSSLNKAKGDENPKQESQ 1217


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,481,263
Number of Sequences: 53049
Number of extensions: 497246
Number of successful extensions: 1649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)