Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20186
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b prote... 32 0.23
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 30 1.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 30 1.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 30 1.2
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 28 3.7
AL031634-3|CAA21036.1| 556|Caenorhabditis elegans Hypothetical ... 28 3.7
Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 27 6.4
U39998-5|AAK71421.2| 408|Caenorhabditis elegans Gustatory recep... 27 6.4
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 27 6.4
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b protein
protein 17 protein.
Length = 276
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = -2
Query: 507 RGLWVHAFRNFRNVFEDRKGGQLFPLPSWRKIFSRYISASAIVMSFES 364
+GL V N + E+R+ +LFP P++ ++ + YI S +V +FE+
Sbjct: 143 KGLNVRKLVNHDSRIENRQLLKLFPTPNYLRLSNDYICESILVQNFET 190
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 10 LIVRDNKFDSRRKTRAPALGSPPMSAALYVPPGRR*NEVPLSLQLE*RDSFQLTKARKET 189
L+ +DN+ S + R+ A SPP A Y P R E P S + E + S + R+
Sbjct: 1625 LLAQDNRSPSSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNR 1684
Query: 190 LDSSAVLKPLHD 225
++ + HD
Sbjct: 1685 YNTMEHSRSSHD 1696
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 10 LIVRDNKFDSRRKTRAPALGSPPMSAALYVPPGRR*NEVPLSLQLE*RDSFQLTKARKET 189
L+ +DN+ S + R+ A SPP A Y P R E P S + E + S + R+
Sbjct: 1726 LLAQDNRSPSSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNR 1785
Query: 190 LDSSAVLKPLHD 225
++ + HD
Sbjct: 1786 YNTMEHSRSSHD 1797
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 10 LIVRDNKFDSRRKTRAPALGSPPMSAALYVPPGRR*NEVPLSLQLE*RDSFQLTKARKET 189
L+ +DN+ S + R+ A SPP A Y P R E P S + E + S + R+
Sbjct: 1726 LLAQDNRSPSSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNR 1785
Query: 190 LDSSAVLKPLHD 225
++ + HD
Sbjct: 1786 YNTMEHSRSSHD 1797
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -3
Query: 449 EVNFFLYPVGGKYSPDTYQPVPS*CPSRALYISQVFLVIYFYSYNSLKTKFKSIQN 282
EVN LYP GKY P P +R + V V Y L K K+I N
Sbjct: 165 EVNEHLYPQIGKYFPFAVAKNPGYATARQYFNQSVIHVDMMYFVERL-LKLKTIDN 219
>AL031634-3|CAA21036.1| 556|Caenorhabditis elegans Hypothetical
protein Y32B12C.3 protein.
Length = 556
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 353 SQVFLVIYFYSYNSLKTKFKSIQNYRGQCYSLNGILEVERWLS 225
SQ+FLV+ F N LKT F S Y+ + I E++ W S
Sbjct: 28 SQLFLVLPFVDRNILKTVFIS-SIYKQRTIDFQEIFELDIWNS 69
>Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical
protein C44H4.2 protein.
Length = 738
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 334 FTSIVIIVLKLSSNQFKTIGGSVI 263
FT+ I+VL LSSN+ KT+ +I
Sbjct: 289 FTNSSIVVLVLSSNELKTLTAGII 312
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LRSVRPLCLPHSMCHLDAVRMKCHYRCNWNKE 154
L V C+ S+C LD +MKC + C ++ E
Sbjct: 1293 LTCVPGYCMSDSLCELDGNQMKCRH-CKYHGE 1323
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LRSVRPLCLPHSMCHLDAVRMKCHYRCNWNKE 154
L V C+ S+C LD +MKC + C ++ E
Sbjct: 1293 LTCVPGYCMSDSLCELDGNQMKCRH-CKYHGE 1323
>U39998-5|AAK71421.2| 408|Caenorhabditis elegans Gustatory receptor
family protein 5 protein.
Length = 408
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 356 ISQVFLVIYFYS--YNSLKTKFKSIQNYRGQCYSLNGILEVERW 231
+S +FLV + YS SLK K + QN++G + RW
Sbjct: 108 LSMIFLVYWQYSGQLESLKAKLEICQNFQGLRSKTRKFYDGARW 151
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LRSVRPLCLPHSMCHLDAVRMKCHYRCNWNKE 154
L V C+ S+C LD +MKC + C ++ E
Sbjct: 1293 LTCVPGYCMSDSLCELDGNQMKCRH-CKYHGE 1323
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = +1
Query: 13 IVRDNKFDSRRKTRAPALGSPPMSAALYVPPGRR*NEVPLSLQLE*RDSFQLTKARKETL 192
++ D++ D+ ALG+ +S PP +V ++ + ++T ++ T
Sbjct: 1535 MIGDDEADTTLTALQSALGNASLSLPASPPPNTETTKVNTTVIPSDVLATRMTMSQSSTK 1594
Query: 193 DSSAVLKPLHDDNQRSTSRIPFRE*HCP 276
S+ + H DNQ + R + H P
Sbjct: 1595 SSNVSVSSRHRDNQSAPPRHHHHQPHPP 1622
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = +1
Query: 13 IVRDNKFDSRRKTRAPALGSPPMSAALYVPPGRR*NEVPLSLQLE*RDSFQLTKARKETL 192
++ D++ D+ ALG+ +S PP +V ++ + ++T ++ T
Sbjct: 1696 MIGDDEADTTLTALQSALGNASLSLPASPPPNTETTKVNTTVIPSDVLATRMTMSQSSTK 1755
Query: 193 DSSAVLKPLHDDNQRSTSRIPFRE*HCP 276
S+ + H DNQ + R + H P
Sbjct: 1756 SSNVSVSSRHRDNQSAPPRHHHHQPHPP 1783
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,765
Number of Sequences: 27780
Number of extensions: 254708
Number of successful extensions: 742
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -