Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 25  NKFDSRRKTRAPALGSPPMSAALYVPPGRR 114
           N  D+    R   +GSP  + + ++P  RR
Sbjct: 644 NCLDASSSRRGSKIGSPTPAESTFIPEERR 673



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 445 STFSSTQLEENILQIHISQCHRNVLREHY 359
           +T S  +     +QIHISQ  + +L   Y
Sbjct: 546 NTASRMEATSQAMQIHISQSTKELLSPSY 574


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 326 YSYNSLKTKFKSIQNYRGQCYSLNGILEV 240
           Y+YN+   K     NYR   Y++N I ++
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYYNINYIEQI 117


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 248  GFRLENNTAPYSFELI 295
            G+RL ++  PY FE +
Sbjct: 1015 GYRLSSSEKPYMFETV 1030


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 326 YSYNSLKTKFKSIQNYRGQCYSLNGILEV 240
           Y+YN+   K     NY+   Y++N I ++
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 326 YSYNSLKTKFKSIQNYRGQCYSLNGILEV 240
           Y+YN+   K     NY+   Y++N I ++
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,512
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)