Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20186
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42780.1 68418.m05210 zinc finger homeobox family protein / Z...    34   0.052
At5g67300.1 68418.m08486 myb family transcription factor contain...    28   4.5  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    28   4.5  
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr...    27   5.9  

>At5g42780.1 68418.m05210 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to unknown protein
           (pir||T05568)
          Length = 242

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -1

Query: 454 EGRSTFSSTQLEENILQIHISQCHRNVLREHYIYPKSF*LFTSIVIIVLKLSSNQFKTI 278
           +G   F S+  EE+ L      CHRN  RE  I P++  + T  V+ VLK+SS QF+ I
Sbjct: 81  DGCGEFVSSTGEEDSLNCAACGCHRNFHREELI-PENGGV-TETVLEVLKISSCQFRRI 137


>At5g67300.1 68418.m08486 myb family transcription factor contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 305

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 22  DNKFDSRRKTRAPALGSPPMSAALYVPPG 108
           D   D R   R+ + GSPP+   LY+ PG
Sbjct: 116 DGSEDHRPVKRSVSAGSPPVVTGLYMSPG 144


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 485 SGTSEMFSKIGREVNFFLYPVGGKYSPDTYQPVPS*CPSRALYISQVFLVIYFYSY 318
           S T E++ ++GR+      P+G +Y    Y    + C      +  VF++ +F+ +
Sbjct: 26  SPTFEIYPELGRDSQLMTDPLGFQYLHSIYTFSLNPCSETNTNMKVVFVIFFFFLF 81


>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 328

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 439 FSSTQLEEN--ILQIHISQCHRNVLREHYIYPKSF 341
           FS  ++EEN  I Q H++     V    YI+P SF
Sbjct: 9   FSEQEIEENSIIQQFHMNSIVGEVQEAQYIFPHSF 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,651
Number of Sequences: 28952
Number of extensions: 240951
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)