Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20185
         (480 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.4  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.8  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 339 LTKYFNFETINEKQKFIFTVHILNYH 262
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 339 LTKYFNFETINEKQKFIFTVHILNYH 262
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 339 LTKYFNFETINEKQKFIFTVHILNYH 262
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 330 YFNFETINEKQKFIFTVHILNYH 262
           YFN          + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 330 YFNFETINEKQKFIFTVHILNYH 262
           YFN          + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 220 INTCGSKNLSVMFSVIIQYVYCENKLLFLINGF 318
           +++  SK L ++FSV      CE    FLI+ F
Sbjct: 218 VHSESSKVLPLLFSVSSSSYNCEVLFSFLIDQF 250


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 73   TFWSAXTSFSYWCLFIIRR 17
            T+WS+ T+  +W     RR
Sbjct: 1041 TWWSSTTTSPWWTTTTTRR 1059


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,541
Number of Sequences: 336
Number of extensions: 1601
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)