Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20185
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   2.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   4.5  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   7.8  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 269  IITENITLRFLDPQVFIGLQILHLLHPRPVLPQ*KQHLFLEVV 141
            +I  N  + F+ PQ     + +HL   + V  Q K+H+FL+++
Sbjct: 2988 VILTNNRILFVQPQQLNCKKEIHLSKVKTVKLQSKEHIFLQLL 3030


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 332 LVNSHVSSNLLNYRDSTTFSIEIISPKY 415
           L+++ ++SN  NY D+   S+ +  P Y
Sbjct: 462 LLDTSINSNWCNYEDTVQVSVRLNRPMY 489


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 338 NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 436
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 398 SQLRMLCYHDNSVGYLKHES*PNILILKPLMRNKSLF 288
           +QL+ LC+ DN + Y+  ++  + L    L ++K +F
Sbjct: 422 NQLQNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVF 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,623
Number of Sequences: 5004
Number of extensions: 25130
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)