Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20185
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              27   6.1  

>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 133 AWPSTTSTFTLALDSRF-FLGTFWSAXTSF---SYWCLFIIRRLSRIF 2
           AWP  T   T AL + + +LG  +   T+F   S WCLFI+ +  R +
Sbjct: 707 AWPEPTPLITSALRADWTWLGRRYGLATTFLIISLWCLFILAKDRRTY 754


>SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 296 FCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF*EMI 448
           FC+  M S     +NS + +  LN++ ST    E++  K S   G F + I
Sbjct: 183 FCWQPMCS-----INSEIRTTFLNFKPSTIADFELLREKLSLLNGTFHQYI 228


>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 269 FSMCTVKINFCFSLMVSKLKYLVNSHVSSNLLN 367
           +S+C  +  F  SL    LK L+    SS+L+N
Sbjct: 243 YSLCPSETEFTISLFTMLLKALIREGASSHLIN 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,936
Number of Sequences: 59808
Number of extensions: 165469
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)