Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20185
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.9  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 339 LTKYFNFETINEKQKFIFTVHILNYHREHYTKIFRPTSI 223
           L  YFN          + TV +LN+H     +   P+ I
Sbjct: 325 LGSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWI 363


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 339 LTKYFNFETINEKQKFIFTVHILNYHREH 253
           L  YFN          + T+ ILNYH  +
Sbjct: 294 LGTYFNCIMFMVASSVVSTILILNYHHRN 322


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -1

Query: 330 YFNFETINEKQKFIFTVHILNYHREHYTKIFRPTSI 223
           YFN          + TV +LN+H     +   P+ I
Sbjct: 328 YFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWI 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,105
Number of Sequences: 438
Number of extensions: 1586
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)