Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20185
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07680.1 68415.m00992 ABC transporter family protein                29   1.6  
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:...    27   8.7  

>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 145 WCIFAWPSTTSTFTLALDSRF-FLGTFWSAXTSFSYWCLF 29
           WC+F W +T + F+L     F  +G    A T F+   LF
Sbjct: 256 WCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALF 295


>At2g20290.1 68415.m02370 myosin, putative similar to myosin
           (GI:499047) [Arabidopsis thaliana]
          Length = 1493

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 327 FNFETINEKQKFIFTVHILNYHREHYTK 244
           F     NEK +  FT H+L   +E YTK
Sbjct: 458 FCINLTNEKLQQHFTQHVLKMEQEEYTK 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,504,109
Number of Sequences: 28952
Number of extensions: 117365
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)