Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20183
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 67 1e-11
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 66 2e-11
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 62 6e-10
11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778... 55 6e-08
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938... 49 3e-06
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 49 4e-06
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 41 0.001
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 40 0.001
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 36 0.024
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236... 29 2.7
02_01_0166 + 1154695-1156569 29 3.6
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 29 3.6
07_01_1060 + 9330217-9330219,9330490-9330561,9330773-9330917,933... 29 4.8
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 28 6.3
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 28 6.3
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +3
Query: 249 SQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 428
S VL+ GL+GLGAEIAKN++L GVKSV L D++ ++ DL S F +G NRA+ +
Sbjct: 102 SNVLVSGLNGLGAEIAKNLVLAGVKSVTLHDDDNVELWDLSSNFFLTEKDVGQNRAQTCV 161
Query: 429 ERARGLNPMVDVTSHT 476
++ + LN V +++ T
Sbjct: 162 QKLQELNNAVIISTIT 177
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVK-----SVFLLDNEKLKQIDLYSQFL 383
G L ++ +++ ++G LG E KN+ L G+ + + D++ +++ +L QFL
Sbjct: 457 GSNLQKKLEQAKIFMVGSGALGCEFLKNLALMGISCNQNGKLTVTDDDVIEKSNLSRQFL 516
Query: 384 CPPDKIGVNRAEGSLERARGLNPMVDV 464
IG ++ + A +NP + V
Sbjct: 517 FRDWNIGQPKSTVAATAAMAINPKLHV 543
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +3
Query: 249 SQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 428
S VL+ GL+GLGAEIAKN++L GVKSV L D++ ++ DL S F +G NRA+ +
Sbjct: 179 SNVLVSGLNGLGAEIAKNLVLAGVKSVNLHDDDNVELWDLSSNFFLTEKDVGQNRAQTCV 238
Query: 429 ERARGLNPMVDVTSHT 476
++ + LN V +++ T
Sbjct: 239 QKLQELNNAVIISTIT 254
Score = 35.1 bits (77), Expect = 0.055
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVK-----SVFLLDNEKLKQIDLYSQFL 383
G L ++ +++ ++G LG E KN+ L G+ + + D++ +++ +L QFL
Sbjct: 581 GSNLQKKLEQAKIFMVGSGALGCEFLKNLALMGISCNQNGKLIVTDDDVIEKSNLSRQFL 640
Query: 384 CPPDKIGVNRAEGSLERARGLNPMVDV 464
IG ++ + A +NP + V
Sbjct: 641 FRDWNIGQPKSTVAATAAMAINPKLHV 667
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/77 (44%), Positives = 46/77 (59%)
Frame = +3
Query: 249 SQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 428
S VL+ GL+GLGAEIAKN+ L GVKS+ L D ++ DL F D IG NRA
Sbjct: 195 SNVLVSGLNGLGAEIAKNLALAGVKSITLHDMGNVEMWDLSGNFFLSEDDIGKNRAVACT 254
Query: 429 ERARGLNPMVDVTSHTK 479
+ + LN V +++ T+
Sbjct: 255 AKLQELNNAVLISTLTE 271
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVK-----SVFLLDNEKLKQIDLYSQFL 383
G +L ++ + V ++G LG E KN+ L GV + + D++ +++ +L QFL
Sbjct: 582 GSKLQKKMRDANVFVVGSGALGCEFLKNLALMGVSCGLKGKLTITDDDIIEKSNLSRQFL 641
Query: 384 CPPDKIGVNRAEGSLERARGLNPMVDVTS 470
IG ++ + A +N + + +
Sbjct: 642 FRDWNIGQAKSTVAAAAASAINSSLHINA 670
>11_04_0388 +
17076157-17076254,17076762-17076813,17077672-17077867,
17078242-17078321,17078465-17078581,17078895-17078950,
17079238-17079268,17079292-17079342,17080411-17080477,
17080621-17080724,17080802-17080909,17081874-17081987
Length = 357
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDK 398
G+ + + + VL+ G++G E KN++L GV S+ L+D+ + + DL + FL P D+
Sbjct: 27 GVDAQKRLSKAHVLVCGMNGTTTEFCKNIVLAGVGSLSLMDDHLVTEDDLNANFLIPHDE 86
Query: 399 I---GVNRAEGSLERARGLNPMVDVTSHTKGVDELPD 500
G +RAE E + NPMV V KG L D
Sbjct: 87 SIYGGRSRAEVCCESLKDFNPMVRVAVE-KGDPSLID 122
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 154 GNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAA 252
G E EL+ E YDRQIR+WG+D+QKRL A
Sbjct: 5 GGAEEELTAQETALYDRQIRVWGVDAQKRLSKA 37
>01_01_1178 +
9385261-9385374,9385457-9385620,9386251-9386453,
9387130-9387362,9387584-9387640,9388120-9388241,
9388366-9388425,9388426-9388543,9389005-9389286
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +3
Query: 207 NPPVGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLC 386
NP GLR + + +VL++G GLG E+ K++ L+G K++ ++D + + +L QFL
Sbjct: 34 NPSPGLRDSLGSLV-EVLVVGAGGLGCELLKDLALSGFKNIHVIDMDTIDVSNLNRQFLF 92
Query: 387 PPDKIGVNRAEGSLERARGLNPMVDVTSH 473
+G ++AE + +R V++ H
Sbjct: 93 RVQDVGKSKAEVAAKRVMERVSGVNIVPH 121
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/86 (24%), Positives = 47/86 (54%)
Frame = +3
Query: 234 EETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNR 413
E ++VL++G G+G E+ K + L+G + + ++D + ++ +L QFL +G ++
Sbjct: 13 EAVKAAKVLMVGAGGIGCELLKTLALSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQSK 72
Query: 414 AEGSLERARGLNPMVDVTSHTKGVDE 491
A + + P +++TS+ V +
Sbjct: 73 AHVARDAVLKFRPNINITSYHANVKD 98
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/88 (22%), Positives = 46/88 (52%)
Frame = +3
Query: 210 PPVGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCP 389
P GL + + S +L++G GLG+ +A + GV + ++D ++++ +L+ Q +
Sbjct: 84 PQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVELDNLHRQIIHI 143
Query: 390 PDKIGVNRAEGSLERARGLNPMVDVTSH 473
+G + + + R + +VD T++
Sbjct: 144 EAYVGQPKVKSTAASCRAYDIVVDATNN 171
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +3
Query: 297 KNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 476
KN+ L GVKSV L D + ++ DL + F + IG NRA + + + LN V V++ T
Sbjct: 117 KNLALAGVKSVTLHDVKNVEMWDLSANFFLSENDIGKNRAAACVSKLQELNNAVLVSALT 176
Query: 477 K 479
+
Sbjct: 177 E 177
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVK-----SVFLLDNEKLKQIDLYSQFL 383
G +L ++ + ++G LG E KN+ L GV + + D++ +++ +L QFL
Sbjct: 488 GSKLQKKLEEANTFVVGSGALGCEFLKNLALMGVSCSPKGKLTITDDDVIEKSNLSRQFL 547
Query: 384 CPPDKIGVNRAEGSLERARGLNP 452
I ++ + A +NP
Sbjct: 548 FRDWNIRQAKSTVAAAAASAINP 570
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDK 398
G+ ++ T S V++IGL G+G+ A ++ +GV + L+D +++ L + D
Sbjct: 86 GMESQKKVTGSFVVVIGLGGVGSHAASMLLRSGVGRLLLVDFDQVSLSSLNRHAVATRDD 145
Query: 399 IGVNRA 416
+G +A
Sbjct: 146 VGTPKA 151
>03_06_0246 +
32622793-32622804,32622883-32623057,32623395-32623659,
32624594-32624693,32625076-32625125,32625239-32625293,
32625742-32625774
Length = 229
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 421 PSARFTPILSGGHRNWEYRSIC 356
P +F I +GGH WE+RSIC
Sbjct: 182 PKPKF--IFNGGHELWEWRSIC 201
>02_01_0166 + 1154695-1156569
Length = 624
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 280 SPDKPMINTWLHVVSSASLSPTGGFVGRTVRLLP 179
SPD +NT LH +S+AS P+ + R R LP
Sbjct: 113 SPDAATLNTLLHGLSTASPHPSTPALLRLFRFLP 146
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 506 LTEFDVVCATGLKQEQFERINNACRDSNKK 595
++E DV C+TG+ E+ + + CRDS+ K
Sbjct: 1203 MSEPDVSCSTGVVSEESLPVCSLCRDSDSK 1232
>07_01_1060 +
9330217-9330219,9330490-9330561,9330773-9330917,
9331006-9331133,9331689-9331803,9331881-9331984,
9332356-9332568,9332637-9332657
Length = 266
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 252 QVLIIGLSGLGAEIAKNVILTGVK 323
QVLI+G +G EIAK + GVK
Sbjct: 116 QVLILGFGAIGVEIAKRIRPFGVK 139
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -3
Query: 422 TLRSIYADLVRRTQKLGVQIDLFQFLIV*QKHTFYTGEDYVFCNFSAESGQADD*YLAAR 243
TL +YA L+R + +++ +F+ +V G + CNF +S + ++ AR
Sbjct: 176 TLLQVYAALIR----VFIELSMFEDALVTYIEAKKIGVELQLCNFLLKSLVKRNQFMYAR 231
Query: 242 SLFCESK 222
SLF + K
Sbjct: 232 SLFDDMK 238
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 180 GRSRTVRPTNPPVGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKS 326
GR+ T RPTNP G R + T + I+ + G + V + GV S
Sbjct: 1429 GRACTARPTNPVTGERAVGDLTLAD--IVANATDGKTLTSEVTVRGVVS 1475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,953
Number of Sequences: 37544
Number of extensions: 343417
Number of successful extensions: 1014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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