Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20183
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35) 69 4e-12
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_4956| Best HMM Match : ThiF (HMM E-Value=0) 58 7e-09
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 28 6.4
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.5
>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
Length = 1026
Score = 68.9 bits (161), Expect = 4e-12
Identities = 41/92 (44%), Positives = 53/92 (57%)
Frame = +3
Query: 216 VGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPD 395
+G ++ S VLI GL GLG EIAKNV+L GVKSV L D ++ DL SQF
Sbjct: 67 LGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGVKSVTLHDTGAVELSDLTSQFFLNKK 126
Query: 396 KIGVNRAEGSLERARGLNPMVDVTSHTKGVDE 491
+G NRAE S R LN V ++ +T+ + E
Sbjct: 127 DVGKNRAEVSHPRIAELNTYVSMSVNTQKLTE 158
>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 63.3 bits (147), Expect = 2e-10
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +3
Query: 216 VGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPD 395
+G + ++ + V + G+ GLG EIAKN+ L G+KS+ L D DL SQF D
Sbjct: 19 LGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLHDTRAASMADLGSQFFLRED 78
Query: 396 KI--GVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFLRN 515
+ NRA S R LNP V V + T +DE L+N
Sbjct: 79 DVTSSRNRAVASAGRVAELNPYVSVHTQTDALDENNLDVLKN 120
>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
Length = 213
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Frame = +3
Query: 216 VGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPD 395
+G LA++ S++L++G G+G E+ KN++LTG K++ L+D + + +L QFL
Sbjct: 13 LGGSLADKVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQ 72
Query: 396 KIGVNRAEGSLERARGLNP 452
+G ++A+ + E A NP
Sbjct: 73 HVGKSKAKVARESALRFNP 91
>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Frame = +3
Query: 216 VGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPD 395
+G LA++ S++L++G G+G E+ KN++LTG K++ L+D + + +L QFL
Sbjct: 13 LGGSLADKVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQ 72
Query: 396 KIGVNRAEGSLERARGLNP 452
+G ++A+ + E A NP
Sbjct: 73 HVGKSKAKVARESALRFNP 91
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +3
Query: 333 LLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFL 509
+LDN + + D SQFL P + +G NRAE SL R + LNPMV V++ + D+FL
Sbjct: 1 MLDNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFL 59
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 506 LTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWG 619
L +FDVV ATG + ++ CR N KF DV+G
Sbjct: 59 LDDFDVVVATGCSSDILANLDERCRAKNIKFFASDVFG 96
>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/88 (25%), Positives = 42/88 (47%)
Frame = +3
Query: 210 PPVGLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCP 389
P +G++ + S VL++G GLG A + G+ + L+D + + +L+ Q L
Sbjct: 67 PEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDYDVVDTSNLHRQVLHT 126
Query: 390 PDKIGVNRAEGSLERARGLNPMVDVTSH 473
D++ V + E + + LN +H
Sbjct: 127 EDRVEVPKVESAKQTLLRLNSDAQYNTH 154
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 343 LSNKNTLFTPVRITFFAISAPSPDKPMINTW 251
L K T + P ++ F +S P P + I+TW
Sbjct: 60 LMRKRTRWNPSHLSLFHLSEPDPYQSAISTW 90
>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 594
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 524 VCATGLKQEQFERINNACRDSNKKFICGDVWGTVRATCSLI 646
+C GL+ + R + NK F+C + T RA +L+
Sbjct: 442 ICGKGLRTKSSLRDHRKTHTDNKPFVCEECGKTFRANHNLV 482
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,341,657
Number of Sequences: 59808
Number of extensions: 413763
Number of successful extensions: 2035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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