Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20183
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 62 5e-10
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 59 3e-09
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 59 3e-09
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 48 5e-06
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 40 0.002
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 38 0.005
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 35 0.049
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 35 0.049
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 29 4.3
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical pr... 28 7.5
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical... 27 9.9
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +3
Query: 261 IIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERAR 440
++G L EI K+++L GV+S +++D+ K++Q D+ F D IG +RAE +LE+
Sbjct: 32 VLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIGQNFFLHADDIGRSRAEATLEKLT 91
Query: 441 GLNPMVDVTSHTKGVDELPDSFLRNLTSYVQQVSNKSNSNEST 569
LNP V ++ ++ L + LT++ V+ N T
Sbjct: 92 ELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQNEEIDT 134
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = +3
Query: 249 SQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 428
+ VLI GL +G EIAKN+IL GV+ V + D + K DL +Q+ +G NRA
Sbjct: 41 ASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCY 100
Query: 429 ERARGLNPMVDVTSHTKGVDELPDSFLR 512
ER LN V+V T DEL + F++
Sbjct: 101 ERLAELNDSVNVQVST---DELTEEFVK 125
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = +3
Query: 249 SQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 428
+ VLI GL +G EIAKN+IL GV+ V + D + K DL +Q+ +G NRA
Sbjct: 126 ASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCY 185
Query: 429 ERARGLNPMVDVTSHTKGVDELPDSFLR 512
ER LN V+V T DEL + F++
Sbjct: 186 ERLAELNDSVNVQVST---DELTEEFVK 210
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/91 (26%), Positives = 49/91 (53%)
Frame = +3
Query: 249 SQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 428
+++L+IG GLG E+ KN+ L+G +++ ++D + + +L QFL +G ++AE +
Sbjct: 43 TKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAA 102
Query: 429 ERARGLNPMVDVTSHTKGVDELPDSFLRNLT 521
+ VT+H +++ F R +
Sbjct: 103 AFVQQRVVGCQVTAHNCRIEDKGQEFYRKFS 133
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/78 (26%), Positives = 45/78 (57%)
Frame = +3
Query: 234 EETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNR 413
E+ S++L+IG G+G E+ KN+ +TG + V ++D + + +L QFL + + ++
Sbjct: 9 EKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSK 68
Query: 414 AEGSLERARGLNPMVDVT 467
A + + + P +++T
Sbjct: 69 AATATQVVKQFCPQIELT 86
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +1
Query: 166 VELSEAEAEQYDRQIRLWGLDSQKRLRAAK 255
+E+S+AE YDRQIRLWG+++Q ++R +K
Sbjct: 1 MEVSKAEQAIYDRQIRLWGMEAQNKIRNSK 30
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 219 GLRLAEETTCSQVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFL 383
G+ + S+VLIIG LGAE+AK + L GV + L+D+ + ++ FL
Sbjct: 19 GMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDHRLVDTEEIGMNFL 73
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 500 QLLTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTV 625
+ LT+F +V E+ ++NN CR + +FI G ++G +
Sbjct: 119 EYLTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYGWI 160
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +3
Query: 255 VLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLER 434
VLI+G GLG +A + G+ ++ ++D + + +L+ Q D++G ++A+ +
Sbjct: 40 VLIVGAGGLGCPVATYLGAAGIGTIGIVDYDHISLDNLHRQVAYKEDQVGKSKAQALADN 99
Query: 435 ARGLNPMVDVTSHTKGVD 488
+ N ++V H +D
Sbjct: 100 IKLQNSDLNVQVHNTSLD 117
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/84 (22%), Positives = 46/84 (54%)
Frame = +3
Query: 255 VLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLER 434
V ++G+ G+G+ +A+ + G+ + L D +K+ +I ++ P++ G+++ E + +
Sbjct: 87 VAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKV-EIANMNRLFYQPNQAGLSKVEAARDT 145
Query: 435 ARGLNPMVDVTSHTKGVDELPDSF 506
+NP V + H + + D+F
Sbjct: 146 LIHVNPDVQIEVHNFNITTM-DNF 168
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 35.1 bits (77), Expect = 0.049
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 252 QVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 425
+VLI+G LG IA+ +I GV+ + LDN + + Q L + ++G +AE +
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385
Query: 426 LERARGLNPMVDVTSH 473
+ + P + T+H
Sbjct: 386 QAAIQRIFPSIQATAH 401
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 35.1 bits (77), Expect = 0.049
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 252 QVLIIGLSGLGAEIAKNVILTGVKSVFLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 425
+VLI+G LG IA+ +I GV+ + LDN + + Q L + ++G +AE +
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385
Query: 426 LERARGLNPMVDVTSH 473
+ + P + T+H
Sbjct: 386 QAAIQRIFPSIQATAH 401
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -2
Query: 642 REHVARTVPQTSPQINFLLLSRQALLIRSNCSCLRPVAHTTSNSVRSCQVAHLRP 478
R + R + + N S++ R C C+ P+ H + S+ SC A +P
Sbjct: 461 RSSILRDLKRVKNMSNVRAKSKEQNANRE-CECMDPLVHIYAESIMSCLAADTKP 514
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 82 RVRLYPNIVLNLLKL*ITALQKMVGNNEVELSEAEAEQYDRQIRLWGLDSQK 237
R+ LY +L +L+ AL++ VG + E+ E +QYD+Q L D Q+
Sbjct: 442 RIHLYCMEILEMLRE-NGALKQAVGILQSEIYVEEQKQYDKQFELLHQDYQE 492
>Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical
protein AC3.8 protein.
Length = 531
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 161 LFPTIFCNAVIYNFNKFSTIFGYN 90
LF ++CN + YN+ + +FGY+
Sbjct: 9 LFFALYCNVLAYNYLVVAPVFGYS 32
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 598 KLFVAVATSIVDSFELLLFETCCTYDVKFRKK 503
KLFV V + D F LF + YD+K R+K
Sbjct: 258 KLFVKVEKAAADPFFEPLFASMAIYDIKNRQK 289
>AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical
protein Y73F8A.26 protein.
Length = 476
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 624 TVPQTSPQINFLLLSRQALLIRSNCSCLRPVAHTTSNSVRSCQVAH 487
+V +P+I+ LL S +A +IR +CL +A + V AH
Sbjct: 231 SVVDGNPEIDILLASMRASVIRCEHNCLYKLARINGHYVGHLFAAH 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,077,108
Number of Sequences: 27780
Number of extensions: 310057
Number of successful extensions: 897
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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