Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20183
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 EIAKNVILTGVKSVFLLDNEKLKQI 362
           E  KN ++   K+VF+L+NE ++ I
Sbjct: 191 EDTKNKLIEESKTVFILNNEIIRSI 215


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 555 NCSCLRPVAHTTSNS 511
           NC   R V HTTS+S
Sbjct: 404 NCKINRKVHHTTSSS 418


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 448 FKPRALSNEPSARFTPILSGGHRNWEYR 365
           F+PRA  +    R+    S  + NWE++
Sbjct: 166 FEPRATDSRHYDRYKEEESNENYNWEHK 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,689
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)