Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20181X
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   2.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.4  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   6.4  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   6.4  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 290 EKHD-TKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSIN 466
           ++H+ T+P   +   + +PK +     +  +   +  + ++N+   + G NS+NH    N
Sbjct: 337 DRHEVTRPAAPANRGNGFPKRSS----DEQQWRNNQPSTSNNRWHNNNGNNSNNHWRKNN 392

Query: 467 SDYSGQSKSSR 499
            + +  + SSR
Sbjct: 393 PNDNRNNTSSR 403


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 422 EDAGFNSHNHASSIN 466
           E +GF S NH  SIN
Sbjct: 359 EPSGFTSSNHPFSIN 373


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +2

Query: 266 AYSYHKQWEKH--DTKPLIISVPNSNYPK 346
           AY +H +WE+      PL     +S Y K
Sbjct: 278 AYDFHGKWERETGHNAPLYSPSSDSQYQK 306


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 269  YSYHKQWEK 295
            Y YH QW+K
Sbjct: 2015 YDYHGQWDK 2023


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 177 RHSDHCCIDRRQPAHCFWNKFLR-LQLDLRNHIV 79
           R   +C ID+RQ   C + ++ + L + ++   V
Sbjct: 123 REEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 156


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 79  NNVITEVKLQPQKF 120
           +N +T +KLQPQ F
Sbjct: 298 SNRMTPLKLQPQNF 311


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 79  NNVITEVKLQPQKF 120
           +N +T +KLQPQ F
Sbjct: 294 SNRMTPLKLQPQNF 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,980
Number of Sequences: 336
Number of extensions: 1931
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)