Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20181X
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 28 0.71
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 1.2
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 2.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 5.0
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 5.0
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 5.0
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 6.6
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 6.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 6.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.6
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 8.7
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 28.3 bits (60), Expect = 0.71
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 293 KHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAV 397
++D+ L IS N P+ ND+P+ N + Y+ +
Sbjct: 382 RYDSVDLYISNDKRNLPEYNDVPVVINQDCYDKLI 416
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 78 DNLVSHLKLVGHLYVVTKMEMHDDYF 1
DN++ K HLY+ T +E + D+F
Sbjct: 1055 DNIIHVYKCYQHLYLFTPLETNSDFF 1080
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +2
Query: 299 DTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINSDYS 478
D PL+IS P+ N P + P PE E D Q + + N ++H S+ + +
Sbjct: 7 DHTPLLISDPSVNKPFRSRTPSPER-EYCSDCPLQA-----KGSACNGNSH--SLKHETN 58
Query: 479 GQSKSSRN 502
G S S+ N
Sbjct: 59 GASSSNNN 66
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 317 ISVPNSNYPK--NNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINSDYSGQSK 490
+S P S+ P +N P P +S + A A+TS + + SS S SG+
Sbjct: 1249 VSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHH 1308
Query: 491 SSRN 502
N
Sbjct: 1309 HHHN 1312
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 311 LIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDA--GFNSHNHASSINSDYSGQ 484
LI+ V NSN P P+ NS + SN+ +A N + +++N
Sbjct: 389 LILRVQNSNMPPPAPRPVTNNSSNNNTNQSNASNENSPNAPSAANDNTETTTVNPPQEDD 448
Query: 485 SKSSRNSR 508
+++ R
Sbjct: 449 QPMTQHER 456
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 305 LCHVFPIAYDSCMLIGNFGLMNTSIN-VNNRFIVSKC 198
+CH PI CML G+ N N V++R + +C
Sbjct: 1921 MCHKTPILPAICMLCGSVICFNARQNTVSSRRLTGEC 1957
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 320 SVPNSNYPKNNDLPIPENSELYEDAVAQTSN-QQFEDAGFNSHNHAS 457
SVP+S K + P+ ++ D +TSN + N H +S
Sbjct: 116 SVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSS 162
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 302 TKPLIISVPNSNYPKNNDLPIPENSE--LYEDAVAQTSNQQFEDAGFNSHNHASSINSDY 475
+KPL+ V NY + P ++E ++ AV+ + + GF+ N A+ + Y
Sbjct: 310 SKPLVSRV-RDNYANTSYESWPHSTEFDMFTYAVSGSLKLTPQGTGFDCINPANPFSPGY 368
Query: 476 SGQS 487
SG+S
Sbjct: 369 SGKS 372
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 407 SNQQFEDAGFNSHNHASSINSDYSGQSKSSRN 502
S++QF S N +S NSD +G+ +N
Sbjct: 79 SSKQFSVTSKRSQNGSSGSNSDANGRKNGQKN 110
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/70 (21%), Positives = 33/70 (47%)
Frame = +2
Query: 299 DTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINSDYS 478
++ P++ V N N+ N L ENS+ ++ + + NQ+ + + +A S
Sbjct: 266 NSNPIMCMVCNKNFRSQNQLENHENSKKHKKNL-RKMNQEIKKHAKEAQKNAESNKQPED 324
Query: 479 GQSKSSRNSR 508
S+S +++
Sbjct: 325 APSESPYSNK 334
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 368 ENSELYEDAVAQTSNQQFEDAGFNSHNHASSINS 469
+N+ L+ ++A TS D GF+ + S +NS
Sbjct: 18 DNASLFTQSIATTSASTSVDDGFSFDDSISRLNS 51
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 401 QTSNQQFEDAGFNSHNHASSINSDYSGQSKSSRNS 505
+ Q + AG NH S+++SDY Q KS +S
Sbjct: 543 ELERQDLKQAG---ENHYSNLSSDYETQIKSLESS 574
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 123 NKFLRLQLDLRNHIVDNLVSHLKLVGHLYVVTK 25
+K LRL LD+ +++ + L+SHL + + +V+K
Sbjct: 261 SKNLRLSLDMFSNVNNQLLSHL-VTSSISIVSK 292
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -3
Query: 293 FPIAYDSCMLIGNF------GLMNTSINVNNRFIVSKC 198
+ I S +IGNF GL N S+ +NR +S+C
Sbjct: 290 YEIEASSLFVIGNFLFFYEMGLFNISVIYSNRIRMSRC 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,551
Number of Sequences: 5004
Number of extensions: 33444
Number of successful extensions: 104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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