Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20181X
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1216 - 25344638-25345159,25346011-25346511                       28   5.0  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    27   8.8  

>08_02_1216 - 25344638-25345159,25346011-25346511
          Length = 340

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 296 HDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINS 469
           HD  P+    P S  P ++DLP   +  L + + A + N    + GF   N  ++ NS
Sbjct: 209 HDLPPVPFPNP-SLVPFHHDLPTSFHPPLLQHSHANSKNSSSNNGGFVFPNEPNTTNS 265


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 254 NFQSAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPEN-SELYEDAVAQTSNQQF-ED 427
           +F + YSY  QW+ +       S  NS  P++    +P++   L + A++++ N      
Sbjct: 345 SFSNNYSYQSQWQTN-------SFSNSMQPESATASLPDSFQSLGQHAISESFNSSTNSQ 397

Query: 428 AGFNSHNHASSINSDYSGQSKSSR 499
             FN+   A+S   + +  S S++
Sbjct: 398 VSFNTAETATSHYGNVNLDSSSTQ 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,576
Number of Sequences: 37544
Number of extensions: 189116
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)