Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20181X
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31381| Best HMM Match : CENP-B_N (HMM E-Value=0.029)                30   1.3  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_55551| Best HMM Match : CBM_5_12 (HMM E-Value=8.7)                  29   2.2  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   29   2.2  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_16644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_56852| Best HMM Match : CemA (HMM E-Value=1.5)                      27   9.0  
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)                    27   9.0  

>SB_31381| Best HMM Match : CENP-B_N (HMM E-Value=0.029)
          Length = 273

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -2

Query: 195 SSCIGRRHSDHCCIDRRQPAH----CFWNKFLR 109
           +S + RRH   CC ++RQP H    C W   +R
Sbjct: 13  ASVLYRRHFQPCCGEKRQPNHEHTLCLWRHSVR 45


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +2

Query: 296 HDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINSDY 475
           H      ++ P    P N  L  P +SE   D +A T +     +GF     A  ++ D 
Sbjct: 627 HTISNAAMAAPWGQQPANAPLEFPPSSEEEHDGLAATESGVDASSGFWDEESADELDVDA 686

Query: 476 SGQSKSSRN 502
           S  S SS+N
Sbjct: 687 S--SSSSQN 693


>SB_55551| Best HMM Match : CBM_5_12 (HMM E-Value=8.7)
          Length = 463

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 54  ALDGSQGYQQCDYGGQAAAAEIYSKSNGRVASD 152
           A   +QGY   D G Q + A+   + NG V SD
Sbjct: 46  AKTNTQGYSATDKGSQESEAQYKGRKNGNVKSD 78


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 317 ISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAG 433
           I+ PN +Y +  D+  PEN  LY+  +A+   Q  E AG
Sbjct: 231 IAAPNPSYKQKRDIN-PENDILYQWRLARKMEQAQEKAG 268


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = +2

Query: 329 NSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINSDYSGQSKSSRNS 505
           N+N   NN++    NS    ++ + ++N    +   NS+++++S NS+ +  S ++ NS
Sbjct: 110 NNNSNSNNNINSNRNSNSSSNSNSNSNNNSNSNNNINSNSNSNS-NSNSNSNSNNNINS 167


>SB_16644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 263 SAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQT 406
           + Y  H Q +K  T P +  VP S + KNN  P   N+  Y D + ++
Sbjct: 118 TTYKQHFQSQKPLTLPFV--VPYSRHRKNNPHPQMRNTYNYPDTLERS 163


>SB_56852| Best HMM Match : CemA (HMM E-Value=1.5)
          Length = 545

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 269 YSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVA 400
           Y +H+   + DT+ LI  V N+   +N+  P P ++++   +++
Sbjct: 76  YPFHEDSHRRDTRNLIAVVLNTLESQNHKCPGPRSAQVKRQSLS 119


>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
          Length = 1270

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 269  YSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVA 400
            Y +H+   + DT+ LI  V N+   +N+  P P ++++   +++
Sbjct: 1059 YPFHEDSHRRDTRNLIAVVLNTLESQNHKCPGPRSAQVKRQSLS 1102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,329
Number of Sequences: 59808
Number of extensions: 236884
Number of successful extensions: 776
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)