Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20181X
(511 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13695-1|AAA63922.1| 932|Homo sapiens hPMS1 protein. 31 3.1
BC096332-1|AAH96332.1| 920|Homo sapiens PMS1 protein protein. 31 3.1
BC096331-1|AAH96331.1| 669|Homo sapiens PMS1 protein protein. 31 3.1
BC096330-1|AAH96330.1| 920|Homo sapiens PMS1 protein protein. 31 3.1
AY540751-1|ABB04020.1| 659|Homo sapiens rhabdomyosarcoma antige... 31 3.1
AY540750-1|ABB04019.1| 584|Homo sapiens rhabdomyosarcoma antige... 31 3.1
AY267352-1|AAO89079.1| 932|Homo sapiens PMS1 postmeiotic segreg... 31 3.1
AB102875-1|BAD89404.1| 893|Homo sapiens PMS1 nirs variant 7 pro... 31 3.1
AB102872-1|BAD89401.1| 555|Homo sapiens PMS1 nirs variant 4 pro... 31 3.1
AB102870-1|BAD89399.1| 770|Homo sapiens PMS1 nirs variant 2 pro... 31 3.1
AB102869-1|BAD89398.1| 667|Homo sapiens PMS1 nirs variant 1 pro... 31 3.1
BC016305-1|AAH16305.1| 546|Homo sapiens Unknown (protein for IM... 30 4.1
AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1 ... 30 4.1
AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1 ... 30 4.1
AK022988-1|BAB14349.1| 452|Homo sapiens protein ( Homo sapiens ... 30 4.1
AB020691-1|BAA74907.1| 943|Homo sapiens KIAA0884 protein protein. 30 4.1
>U13695-1|AAA63922.1| 932|Homo sapiens hPMS1 protein.
Length = 932
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>BC096332-1|AAH96332.1| 920|Homo sapiens PMS1 protein protein.
Length = 920
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>BC096331-1|AAH96331.1| 669|Homo sapiens PMS1 protein protein.
Length = 669
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>BC096330-1|AAH96330.1| 920|Homo sapiens PMS1 protein protein.
Length = 920
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>AY540751-1|ABB04020.1| 659|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.10E protein.
Length = 659
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512
>AY540750-1|ABB04019.1| 584|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.10B protein.
Length = 584
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 352 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 390
>AY267352-1|AAO89079.1| 932|Homo sapiens PMS1 postmeiotic
segregation increased 1 (S. cerevisiae) protein.
Length = 932
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>AB102875-1|BAD89404.1| 893|Homo sapiens PMS1 nirs variant 7
protein.
Length = 893
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512
>AB102872-1|BAD89401.1| 555|Homo sapiens PMS1 nirs variant 4
protein.
Length = 555
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 298 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 336
>AB102870-1|BAD89399.1| 770|Homo sapiens PMS1 nirs variant 2
protein.
Length = 770
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>AB102869-1|BAD89398.1| 667|Homo sapiens PMS1 nirs variant 1
protein.
Length = 667
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 412
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512
>BC016305-1|AAH16305.1| 546|Homo sapiens Unknown (protein for
IMAGE:4076117) protein.
Length = 546
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 278 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
+++W + + KPL + P ++DLP EN ++ ++ + ++ E+ G N+ +H
Sbjct: 281 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 337
>AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1
isoform 2 protein.
Length = 2083
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 278 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
+++W + + KPL + P ++DLP EN ++ ++ + ++ E+ G N+ +H
Sbjct: 436 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 492
>AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1
isoform 1 protein.
Length = 2036
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 278 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
+++W + + KPL + P ++DLP EN ++ ++ + ++ E+ G N+ +H
Sbjct: 436 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 492
>AK022988-1|BAB14349.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ12926 fis, clone NT2RP2004732, weakly similar to
NEUROFILAMENT TRIPLET M PROTEIN. ).
Length = 452
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 278 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
+++W + + KPL + P ++DLP EN ++ ++ + ++ E+ G N+ +H
Sbjct: 165 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 221
>AB020691-1|BAA74907.1| 943|Homo sapiens KIAA0884 protein protein.
Length = 943
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 278 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
+++W + + KPL + P ++DLP EN ++ ++ + ++ E+ G N+ +H
Sbjct: 275 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 331
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,739,728
Number of Sequences: 237096
Number of extensions: 1058914
Number of successful extensions: 2068
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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