Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20181X
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 29 2.0
U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 29 2.0
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 29 2.6
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 29 2.6
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 28 4.5
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 28 4.5
AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical ... 28 4.5
AF047657-13|AAY86196.1| 143|Caenorhabditis elegans Hypothetical... 27 6.0
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 27 6.0
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 284 QWEKHDTKPLIISVPNSNYPKNNDLPIPENSELY 385
++E TK ++ P +PK ++PIP+ ++L+
Sbjct: 60 EYEVKMTKEVLNRKPGKPFPKKTEIPIPDRAKLF 93
>U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical
protein F14B8.6 protein.
Length = 345
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 314 IISVPNSNYP--KNNDLPIPENSELYEDAVAQTSNQQFEDA---GFNSHNHASSINSDY 475
++ +SN P N + PI S + + T N++ A GFN + S++N+DY
Sbjct: 117 LLMTQSSNQPDRNNQNTPIQVTSNTNQWTLTATINRKCNGADQYGFNCNEQCSTVNNDY 175
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 284 QWEKHDTKPLIISVPNSNYPKNNDLPIPENSELY 385
++E TK ++ P +PK ++PIP+ ++L+
Sbjct: 60 EYEVKMTKEVLNRKPGKPFPKKTEIPIPDRAKLF 93
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = +2
Query: 251 QNFQSAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDA 430
Q Q+A +H Q + + KP+ P N P S E + + QF
Sbjct: 178 QQHQAAAHHHAQQQAREQKPVKAEESKQQEPSENRNQSPSAS--VEQTLLDQLSMQFNGK 235
Query: 431 GFNSHNHASSINSDYSGQSKSSRNS 505
+ HAS+ + S + +S NS
Sbjct: 236 SPSPTVHASTAAAAGSSEDDTSANS 260
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = +2
Query: 251 QNFQSAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDA 430
Q Q+A +H Q + + KP+ P N P S E + + QF
Sbjct: 178 QQHQAAAHHHAQQQAREQKPVKAEESKQQEPSENRNQSPSAS--VEQTLLDQLSMQFNGK 235
Query: 431 GFNSHNHASSINSDYSGQSKSSRNS 505
+ HAS+ + S + +S NS
Sbjct: 236 SPSPTVHASTAAAAGSSEDDTSANS 260
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 272 SYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
SY Q H P + V S+YP ND E ++ ++ N Q G NS
Sbjct: 101 SYGAQ-HHHQPTPSVPEVTRSSYPSQNDDFDDEWTDEDDEQEPTRPNVQ-SSIGSNSRRD 158
Query: 452 ASSINSDYSGQSKSS 496
S +S++ G + S
Sbjct: 159 LSRSHSEHGGPDRGS 173
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 272 SYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
SY Q H P + V S+YP ND E ++ ++ N Q G NS
Sbjct: 101 SYGAQ-HHHQPTPSVPEVTRSSYPSQNDDFDDEWTDEDDEQEPTRPNVQ-SSIGSNSRRD 158
Query: 452 ASSINSDYSGQSKSS 496
S +S++ G + S
Sbjct: 159 LSRSHSEHGGPDRGS 173
>AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical
protein Y37A1B.2b protein.
Length = 592
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 272 SYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
SY Q H P + V S+YP ND E ++ ++ N Q G NS
Sbjct: 127 SYGAQ-HHHQPTPSVPEVTRSSYPSQNDDFDDEWTDEDDEQEPTRPNVQ-SSIGSNSRRD 184
Query: 452 ASSINSDYSGQSKSS 496
S +S++ G + S
Sbjct: 185 LSRSHSEHGGPDRGS 199
>AF047657-13|AAY86196.1| 143|Caenorhabditis elegans Hypothetical
protein F37B4.14 protein.
Length = 143
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 398 LLHLHKVHYFRE*EDHYFWDNYY 330
+L LH +F + + HYFW +Y
Sbjct: 62 ILKLHITFFFSDGDYHYFWGEHY 84
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 177 RHSDHCCIDRRQPAHC-FWNKFLRLQ 103
RH+ HC +DR + C F++ FL L+
Sbjct: 61 RHNGHCVVDRHERNSCRFFSNFLFLK 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,731,774
Number of Sequences: 27780
Number of extensions: 182803
Number of successful extensions: 561
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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