Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20181X
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.34 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 189 CIGRRHSDHCCI 154
           C  RRHSD CC+
Sbjct: 346 CRSRRHSDSCCL 357


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 138 AHCFWNKFLRLQLDLRNHIVDNLVSHLKLVGHLYVVTKMEMHDD 7
           A  F + F    LDLRN+ +D + S+  L   LY +  +E+ D+
Sbjct: 352 ARMFKDLFFLQILDLRNNSIDRIESNAFL--PLYNLHTLELSDN 393


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 431 GFNSHNHASSINSDYSGQSKSSRNSR 508
           GFN+ N     N+DY      ++++R
Sbjct: 102 GFNNKNKDGDDNNDYEDNDYGNQDNR 127


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 310 WFCVMFFPLLMIAV 269
           W C+ FF L++I +
Sbjct: 376 WSCLFFFMLILIGL 389


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 310 WFCVMFFPLLMIAV 269
           W C+ FF L++I +
Sbjct: 429 WSCLFFFMLILIGL 442


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 231 DTSVHKPKISNQHTAIISNGKNMTQNH*SYQYLIVIIPKIMI 356
           + +VH P     +  +++  +   Q+   YQY  +I+P + I
Sbjct: 426 EVAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLILPGVTI 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,868
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)