Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20181X
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    31   0.45 
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    31   0.45 
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    28   3.2  
At3g18300.1 68416.m02329 expressed protein ; expression supporte...    28   4.2  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   5.5  
At1g22120.1 68414.m02765 hypothetical protein                          27   5.5  
At3g61500.1 68416.m06888 hypothetical protein                          27   7.3  
At2g19640.2 68415.m02295 SET domain-containing protein contains ...    27   7.3  
At2g19640.1 68415.m02294 SET domain-containing protein contains ...    27   7.3  
At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00...    27   7.3  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    27   9.7  
At3g50370.1 68416.m05508 expressed protein                             27   9.7  

>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 23/87 (26%), Positives = 41/87 (47%)
 Frame = +2

Query: 248 AQNFQSAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFED 427
           A+  +S  S  +Q+    + PL ++  +S     + LPI ++S L E  V +T+N     
Sbjct: 283 AKEDESTTSEEQQYPAEPSSPLSVA-SDSEAQTPDSLPIDDSSSLEEPQVLETNN----- 336

Query: 428 AGFNSHNHASSINSDYSGQSKSSRNSR 508
            G NS      ++   +GQ+   R+ R
Sbjct: 337 -GRNSETQVPMVDGLDNGQNMERRSGR 362


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
 Frame = +2

Query: 263 SAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQ--------- 415
           S + Y+  +++H T     + P S+ P  N  P P +S LY      +            
Sbjct: 142 SQHMYYSPYDQHQTSGYSSAPPPSSAPAPNPNPAPYSSSLYSAPPYSSGGSSIPPSYEKP 201

Query: 416 --QFEDAGFNSHNHA-SSINSDYSGQSKSS 496
             +F+ +G++ +N + S + SD  G+   S
Sbjct: 202 SVKFDQSGYDGYNRSRSDLGSDLYGKRSDS 231


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
 Frame = +2

Query: 248 AQNFQSAYSYHKQWEKHDTKPLII-SVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFE 424
           A N  S   Y +Q+  H  +     +VP  +Y ++   P+P  ++        T N+ F 
Sbjct: 168 APNQPSGQVYQQQYPTHGYQDFHQQAVPGVSYQQHQQFPVPPTTQPERYPNYATGNESFP 227

Query: 425 DAGFNSHN-------HASSINSDYSGQSKSSRNS 505
             G    N       H   +   YS  ++ S N+
Sbjct: 228 GVGLPQENLPTSSAIHQQEVPYSYSSVAEESGNT 261


>At3g18300.1 68416.m02329 expressed protein ; expression supported
           by MPSS
          Length = 274

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 281 KQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQT-SNQQFEDAGFNSHNHA- 454
           K+  K++  P++ +   S+Y     LP+PE+S  Y  +V +T  +     +G NS + A 
Sbjct: 89  KRLYKYELPPIVSAPTLSSYLPPLPLPLPEHSRKY--SVKETRGSLNGRGSGANSDSEAE 146

Query: 455 SSINSDYSGQSKSSRN 502
            S  S +S +  SS N
Sbjct: 147 KSSKSFWSFKRSSSLN 162


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +2

Query: 248 AQNFQSAYSYHKQWEKHDTKPLII-SVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFE 424
           A N  S   Y +Q+  H  +     +VP  +Y ++   P+P  ++        T N+ F 
Sbjct: 168 APNQPSGQVYQQQYPTHGYQDFHQQAVPGVSYQQHQQFPVPPTTQPERYPNYATGNESFP 227

Query: 425 DAGFNSHNHASS 460
             G    N  +S
Sbjct: 228 GVGLPQENLPTS 239


>At1g22120.1 68414.m02765 hypothetical protein
          Length = 352

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 359 PIPENSELYEDAVAQTSNQQFEDAGFNSHNHASSINSDYSGQSKSSRN 502
           P+ ENS   ++ + +TS+   ++    +HN +   + DYS    ++ N
Sbjct: 57  PLIENSNTDQETLTRTSSSFDQETAIVAHNQSFHQDDDYSKYLTTAEN 104


>At3g61500.1 68416.m06888 hypothetical protein
          Length = 279

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 383 KVHYFRE*EDHYFWDNYY*VLI*LMVLCHVF 291
           K+HY  + E  Y+++NY  +   L+ LC+ F
Sbjct: 19  KLHYMTDSEHGYWFENYMNINTKLLDLCNAF 49


>At2g19640.2 68415.m02295 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 398

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 3   NSHRASPS*SQHISDLQALDGSQGYQQCDYGGQAAAAEIYS 125
           N   ASPS  Q +  LQ    S G   C  G  AAA  ++S
Sbjct: 130 NLAAASPSDFQILLSLQGSGSSNGDPSCSAGDSAAAGFLHS 170


>At2g19640.1 68415.m02294 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 341

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 3   NSHRASPS*SQHISDLQALDGSQGYQQCDYGGQAAAAEIYS 125
           N   ASPS  Q +  LQ    S G   C  G  AAA  ++S
Sbjct: 130 NLAAASPSDFQILLSLQGSGSSNGDPSCSAGDSAAAGFLHS 170


>At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00646
           F-box domain; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 362

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 162 CCIDRRQPAHCFWNKFLRLQLDLRNHIVDNLVSH 61
           C   +  P+   W  FLR+ + L N + DN   H
Sbjct: 253 CISTKIDPSAVSWTTFLRIDMTLINGLPDNFFVH 286


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 213 HC*QVHSSCIGRRHSDHCCIDRRQPAHCFWN 121
           H  ++H   IG R  D CC+ R +    F+N
Sbjct: 71  HPLKLHERIIGYRRRDQCCLCRYKLLDMFYN 101


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 317  ISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEDAGFNSHNH 451
            +S PNSN  +N + P  +  +  +   +Q  N Q +  G  SH+H
Sbjct: 2077 LSDPNSNNTQNPNGPGFKPPQQQQQQSSQEKNTQSQHVGGPSHHH 2121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,403
Number of Sequences: 28952
Number of extensions: 159869
Number of successful extensions: 453
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)